1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacgtaacctccgcaacttttacccggcattttgggtgccgtttttcacgccgaagattggtcggcggctcggcgcaagcgaagagatctgcagtgtgttcttggttaatttcttccctcccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCGCCGCGCCCTGTTCACCGGGAATTCTGGAGCTGAGGGCGCAGGTTCGAG
species | Zea mays |
transcript | GRMZM2G027821_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCEST: gi|78078286|gb|DV506701.1|DV506701
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCEST: gi|211175950|gb|FL257896.1|FL257896
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCEST: gi|74235249|gb|DT643163.1|DT643163
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCEST: gi|211175948|gb|FL257894.1|FL257894
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTTGCAGATCTGCTCCEST: gi|211175951|gb|FL257897.1|FL257897
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCEST: gi|88757594|gb|DY541735.1|DY541735
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCEST: gi|78079351|gb|DV507763.1|DV507763
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
EST: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAG GCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
genomic: CACTGCCACGGCCGGAGCCGGAGGAGGAAGGCGCCAGCCGTAGTCCACAGgtaacgtaac ... ccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCC
caagcgaagagatctgcagtgtgttcttggttaatttcttccctcccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCGCCGCGCCCTGTTCACCGGGAATTCTGGAGCTGAGGGCGCAGGTTCGAG
ggttaat putative branch site (score: 4)
ttaatttcttccctcc CT-rich tract
ttaatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgtaacctccgcaacttttacccggcattttgggtgccgtttttcacgccgaagattggtcggcggctcggcgcaagcgaagagatctgcagtgtgttcttggttaatttcttccctcccactctcagGCAACGCAAGGGAATGCCACTGTTCTAGTCTCGCTCTCGCAGATCTGCTCCGCCGCGCCCTGTTCACCGGGAATTCTGGAGCTGAGGGCGCAGGTTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA