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...ttaaaatttcccatgagttgtacttcatattatttctgttgcctcatgttttatgttgaatctcattgcttactcaaagtcctgtgttatctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAAGAAGC
species | Zea mays |
transcript | GRMZM2G027756_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGG GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAEST: gi|86473445|gb|DY239815.1|DY239815
genomic: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGGgtacggatga ... ctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
EST: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGG GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAEST: gi|38502591|gb|CF972451.1|CF972451
genomic: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGGgtacggatga ... ctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
EST: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGG GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAEST: gi|211214278|gb|FL374167.1|FL374167
genomic: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGGgtacggatga ... ctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
EST: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGG GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAEST: gi|211379390|gb|FL388779.1|FL388779
genomic: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGGgtacggatga ... ctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
EST: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGG GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAEST: gi|211097652|gb|FL400841.1|FL400841
genomic: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGGgtacggatga ... ctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
EST: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGG GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAEST: gi|74239667|gb|DT647581.1|DT647581
genomic: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGGgtacggatga ... ctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
EST: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGG GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
genomic: AGCAGCCGCGACCTCATCGGCTGCGGTTCCTTCGGCGACGTCTATAAAGGgtacggatga ... ctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGA
atgttttatgttgaatctcattgcttactcaaagtcctgtgttatctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAAGAAGC
tgcttac putative branch site (score: 2)
ttatcttttt putative PPT
ttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaatttcccatgagttgtacttcatattatttctgttgcctcatgttttatgttgaatctcattgcttactcaaagtcctgtgttatctttttgtagGTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - tcccatg
- - - - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - catgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgtg