Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13126007|gb|BG316682.1|BG316682EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211173965|gb|FL006047.1|FL006047EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211175637|gb|FL006055.1|FL006055EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|18178672|gb|BM379882.1|BM379882EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGACCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211304348|gb|FL459467.1|FL459467EST: ACGAGGCCAGGGAGT-CACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211175633|gb|FL006051.1|FL006051EST: CGAGGCCAGGGAGTCCACCAGAGGTG-AGCGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: CGAGGCCAGGGAGTCCACCAGAGGTGGAG-GGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211321918|gb|FL078167.1|FL078167EST: ACGAGGCCAGGGAGTCCACCAAAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211173966|gb|FL006048.1|FL006048EST: CGAGGCCAGGGAGTCCACCAGAGGTANGNGGNAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: CGAGGCCAGGGAGTCCACCAGAGGTG-GAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211173963|gb|FL006045.1|FL006045EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211175535|gb|FL450620.1|FL450620EST: CGAGGCCAGGGAGTCCACCAAAGGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: CGAGGCCAGGGAGTCCACCAGA-GGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211173967|gb|FL006049.1|FL006049EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211175634|gb|FL006052.1|FL006052EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211100909|gb|FL435529.1|FL435529EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211175638|gb|FL006056.1|FL006056EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|211173964|gb|FL006046.1|FL006046EST: ACGAGGCCAGGGAGTCCACCAGAGGTG-AGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|12968215|gb|BG265161.1|BG265161EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 3 RNA-Seq libraries.
Block sizes:
45 (upstream exon),
29 (downstream exon)
Score:
10GGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCCGAGCTGCTGTACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAGTCATATGTTGAAG
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
36GGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCCGAGCTGCTGTACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAGTCATATGTTGAAG
Block sizes:
30 (upstream exon),
45 (downstream exon)
Score:
11GGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCCGAGCTGCTGTACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAGTCATATGTTGAAG