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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagttcctgtttttgtaacatataagattcatttagtagagtactagtagaattcattgcattacctgcttgcgtaactgacaaatgttaaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA

Basic information

species Zea mays
transcript GRMZM2G027378_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G09280.2 (Glycine max), 3'ss of exon 1
------gtagttcctgtttttgtaacatataagattcatttagtagagtactagtagaattcattgcattacctgcttgcgtaactgacaaatgttaaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
       ||  || ||  ||  |  |  | ||     | |||  |  ||  || |  |||  |     ||   |  |||   ||       ||||||||  |||||||||| | ||||||||  |  | |||||||| || |||||||| || || ||||| ||||| ||||| ||||||||||||||||||| ||||||||| ||
ttatcaatatgtcatgcattgat--cccacaatggctagtta-cattgtgttattcaaataaaaaagtttgtgt-tttgttaaatatttgtatgttaaa--tgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA

upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 1
gtagttcctgtttttgtaacatataagattcatttagtagagtactagtagaattcattgcattacctgcttgcgtaactgacaaatgttaa-------aaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
   ||   | || |||| |   ||      ||   | | |  || |   |   ||      |  |  || ||| ||  |||  |||| ||         ||||||||||||| | ||||||||  |  | |||||||| || ||||| || || || ||||| ||||| ||||| ||||||||||||||||||| ||||||||| ||
---gtagatattcttgtcatgaattgatccca--caatggc-tagttacatgttttcaaataaaaaatgtttgtgtt-ctgttaaatatttgtatgtttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA

upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA19G38450.1 (Glycine max), 3'ss of exon 1
gtagttcctgtttttgtaacatataag-attcatttagtagagtactagtagaattcattgcattacctgcttgcgtaact-gacaaatgt-taaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
  |  |   ||    | |  ||||| | |  ||||    | | |  | | |||    ||  || ||  ||  || |||    | ||| ||      |||||||||||  | ||||||||  |  | |||||||| |||   ||||| || || || || ||||| ||||| || |||||||||||||||| ||||||||| ||
-aaaatatggtggaaggattatatatgtagccattcttgatatttattgaagatacaatgtcagta--tgagtgtgtagtaaggcaattgcactttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATAGGAGATGGCACAGTTAGTTATGGAATGGATGATGGTGATGACATTTA

upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA03G35790.1 (Glycine max), 3'ss of exon 1
gtagttcctgtttttgtaacatataag-attcatttagtagagtactagtagaattcattgcattacc-tgcttgcgtaactgacaaatgttaaa----aatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
     |   |||   | |  | ||| | |  ||||   | || || |  | |||   |     ||| | ||  |  |||  | |      ||  |    |||||||||||  | ||||||||  |  | |||||||| |||   ||||| || || || || ||||| ||||| ||||||||||||||||||| ||| ||||| ||
---aatttggttgaaggattacatatgtagccattc--ttga-tatttattgaagatacaatgttagcatgagtatgtagttaaaggcatttgtactttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTA

upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT3G52560.4 (Arabidopsis thaliana), 3'ss of exon 1
gtagttcctgtttttgtaacatataagattcatttagtagagtactagtaga-attcattg-cattacctgcttgcgtaactgacaaatgttaaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
 ||     |||| |  |  |   |  |||| |   |   || | || ||    ||| | ||  || |  || ||  || ||   |   |  |   |||  ||||||  | || ||  || | || |||||||| || ||||| ||||| || ||||| ||||| || ||||||||||||||||||||||  |||||||||||
atatgatatgttctgttctctgctttgattaaaaaaagtgattgcttgttttcatttactgatatgaattgtttttgttac--gcttgttattgcaatatagTTCCGAGGAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTA

upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT2G36060.3 (Arabidopsis thaliana), 3'ss of exon 1
gtagttcctgtttttgtaacatataagattcatttagtagagtactagtagaattcattgcattacctgcttgcgtaactgacaaatgttaaaaatgca--gTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
 ||| |  | ||   |     |       | |     |||||   || | |  ||  || | ||  ||        | |||    |||||   |||| |  |||||  | || ||| || |  | |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||||||  |||||||| ||
-tagattgttttcaagctcagtgctttgcttagaatatagagc-ttatttgtgttagtttccttcactaaaaattgagctgtttgatgttgttaatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATTTA

upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 1
gtagttcctgtttttgtaacatataagat-tcatttagtagagtactag-tagaattcattgcattacctgcttgcgtaactgacaa-atgttaaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
  |   |  |  || | ||    |   || |  | |        ||||  |   ||  |    |  |  |   || ||   || |   ||||||    |||||| ||||| ||||||||  |  | ||||| || || ||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||  |||||||| ||
--acaactggagttggaaatgcttggtatcttgtctcaagtgaaactatcttagatggaagttacaaggtatgtgtgtttttgtctttatgttatct-tgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTATTGGAGATGGTACTGTGAGTTATGGAATGGATGATGGAGATGACATATA

upper sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 3'ss of exon 1
------gtagttcctgtttttgtaacatataagattcatttagtagagtactagtagaattcattgcattacctgcttgcgtaactgacaaatgttaaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
      | || |     |||  ||    |   |  | ||| || | | |  || ||   ||||  |  || |   |||      ||    | |   |    |||||| ||||||||||||||  |  | ||||| || || |||||||| ||||| ||||| ||||| || || |||||||||||||||||||  |||||||| ||
tggtctgaagcttagcctttgatatttaaggcgccttattcag-acaattttattaattttcaa-gatttgcgcacttttaagtctctgcatttcca----tgcagTCCCTCGAAACTTCAGATTGCTTGAGGAACTTGAACGTGGAGAAAAGGGTATTGGAGATGGTACTGTCAGCTATGGAATGGATGATGGAGATGACATTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61118174|gb|DN559135.1|DN559135
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAG
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAG
EST: gi|14701404|gb|BI233822.1|BI233822
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211435248|gb|FL105638.1|FL105638
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211055485|gb|FL105742.1|FL105742
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211437851|gb|FL105660.1|FL105660
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211043664|gb|FL105688.1|FL105688
EST:     KNGAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211432642|gb|FL105623.1|FL105623
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211058478|gb|FL105763.1|FL105763
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211435249|gb|FL105639.1|FL105639
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTGCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGC
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTT-CAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGC
EST: gi|211052547|gb|FL105732.1|FL105732
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211040693|gb|FL105669.1|FL105669
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32944125|gb|CF048944.1|CF048944
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211058468|gb|FL105753.1|FL105753
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|37423036|gb|CF649242.1|CF649242
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211046631|gb|FL105707.1|FL105707
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211043659|gb|FL105683.1|FL105683
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211052551|gb|FL105736.1|FL105736
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211430046|gb|FL105613.1|FL105613
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211432648|gb|FL105629.1|FL105629
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211432647|gb|FL105628.1|FL105628
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGASCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211437847|gb|FL105656.1|FL105656
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATAAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211437844|gb|FL105653.1|FL105653
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32848881|gb|CD988562.1|CD988562
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211040700|gb|FL105676.1|FL105676
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211430050|gb|FL105617.1|FL105617
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32943277|gb|CF048096.1|CF048096
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTCCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211040698|gb|FL105674.1|FL105674
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211043654|gb|FL105678.1|FL105678
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCTAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211049592|gb|FL105722.1|FL105722
EST:     TCCAGGGGCGATGASGCTGGGTAGCTCCGGYGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCKTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211055484|gb|FL105741.1|FL105741
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211049591|gb|FL105721.1|FL105721
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211055481|gb|FL105738.1|FL105738
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211046629|gb|FL105705.1|FL105705
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211052545|gb|FL105730.1|FL105730
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|9952032|gb|BE638615.1|BE638615
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211040696|gb|FL105672.1|FL105672
EST:     CCAGGGGCGATGACGCTGGGTAGCTCCGGCGACCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: CCAGGGGCGATGACGCTGGGTAGCTCCGGCG-CCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211052544|gb|FL105729.1|FL105729
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTTGGAGAGAAGGGC
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGT-GGAGAGAAGGGC
EST: gi|211046624|gb|FL105700.1|FL105700
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211437841|gb|FL105650.1|FL105650
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211052543|gb|FL105728.1|FL105728
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211052546|gb|FL105731.1|FL105731
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211430048|gb|FL105615.1|FL105615
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211040692|gb|FL105668.1|FL105668
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|28566611|gb|CB278259.1|CB278259
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211040690|gb|FL105666.1|FL105666
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211430044|gb|FL105611.1|FL105611
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211061438|gb|FL105769.1|FL105769
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211435245|gb|FL105635.1|FL105635
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211058476|gb|FL105761.1|FL105761
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|33103750|gb|CF063710.1|CF063710
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211043665|gb|FL105689.1|FL105689
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211049584|gb|FL105714.1|FL105714
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211046622|gb|FL105698.1|FL105698
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCMGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211043667|gb|FL105691.1|FL105691
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211432646|gb|FL105627.1|FL105627
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCG
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCG
EST: gi|211435257|gb|FL105647.1|FL105647
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211046619|gb|FL105695.1|FL105695
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|14242915|gb|BG840223.2|BG840223
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTT-AGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211432644|gb|FL105625.1|FL105625
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211046617|gb|FL105693.1|FL105693
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAAC
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAAC
EST: gi|211052548|gb|FL105733.1|FL105733
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtagaattcattgcattacctgcttgcgtaactgacaaatgttaaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA
                               aactgac  putative branch site (score: 2)
                                    acaaatgttaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagttcctgtttttgtaacatataagattcatttagtagagtactagtagaattcattgcattacctgcttgcgtaactgacaaatgttaaaaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT