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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggaaaccctagccctagccccgctgcgcgtcgcccagagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG

Basic information

species Zea mays
transcript GRMZM2G027282_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 3'ss of exon 1
---------------------------gtgcgg-aaaccctagccctagccccgctgcgcgtcgcccagagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
                             |||| ||||||||||  | |||||   |  | ||  |||  |  |  || ||| | ||      | ||| | | |      |||||     |||| |||||||||||| ||||||| ||| |||| ||   ||||||||||| ||||||||||||||||||||| || ||||||||||||||||| ||||| |
gtttgctctctctctctctctccgcctccgcgggaaaccctagcttttgccccagcgatc-tcctccatgggatttggtctgatttg------tgggggtttgtctcatcgggtgcct-cagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCAAGGAGAACCAGGAGAAGATCAAACTCAACAAGCAGCTGCCTTACCTTG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 1
--------------------------gtgcggaaaccctagccctagccccgctg--cgcgtcgcccagagtgtcgggactgt--tctgattgatttgggat----gttttgggctg----------ggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
                           | | | ||||||| |||||  ||    |    |     |     ||  |   | ||  ||| |   ||| ||| |     ||||    ||          ||||     |||| ||| ||||| || | ||  ||||| |||| ||   |||||| |||| ||||||||| |||||||||||||||||||| |||||| |||| |||||||
gtacaatctttttgttttttcttctgcttctgtaaccctaaccctaatcctatcgattacactatcttttttgctgcttccgtcttcttagccattagggtttctgatttttaattgaattgtttttggtggctgaagGAAGAGTTGCAGAGGACCAATTTGGAGTTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 1
------------------------------------gtgcggaaaccctagccctagc---cccgctgcgcgtcgcccag-----agtgtcgggactgttctgatt---gatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
                                     | | | ||||||| ||||| |     | ||     |   ||         | ||    |  ||  | ||   |||||    ||  |||  ||  |||     |||| ||| ||||| || | ||  ||||  |||| ||   |||||| |||| ||||||||| |||||||||||||||||||| |||||| |||| |||||||
gtatactcttttctttctgtttcgtttttttccctgcttctgtaaccctaaccctatcgattacactatcttttttccttcttccgttttcttagccattagggtttctgattttaattgaattgtccttcgtgactgaagGAAGAGTTGCAGAGGACCAATTTGGAATTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 3'ss of exon 1
-gtgcggaaaccctagccctagcc---ccgctgcgcgtcgcccagagtgt-cgggactgttctgat-tgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
  |  | | ||  |     |  |    |   ||| | | |     | |   |  || | || |||| |  |||    |    |  | ||  |  |  ||||| ||   |||| || | ||||| ||  |||| ||  | |||||||| |  |||||||||||||||||||||||||| ||||| ||||| || ||| | |
gattagaagacatttatatttactggtcttttgctcattggatgaaattcaccagaattttttgatgtctttttctctcaaatacgttgatttgttgtagGAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATAAAGGAGAACCAGGAGAAGATTAAGCTTAACAAACAGCTTCCTTACTTAG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
--gtgcggaaaccctagccctagccccgctgcgcgtcgcccagagtg--tcgggactgttctgattgat----ttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
     | || |         | |    ||| ||  |  |     |    | ||   ||||   |||| |    ||| | | || |  | ||||  ||  ||||| ||   |||  |  | || || ||    || |||  |||||||||||  |||||||| |||||||||||||| ||||||||||||||||| ||| | |
ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatt--tagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
gtgcggaaaccctagccctagccccgc-tgcgcgtcgcccagagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
||    |  | ||  |  |  | |    |    ||  |     |||    || |       |||||    | || |   ||   |||||| | |||| ||| ||||| || ||||| |||||  ||| ||    |||||||||| ||||||||| ||||||||||| ||||||||||||||||| || ||| | |
gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttga-agGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
gtgcggaaaccctagccctagccccgctgcgcgtc--gcccag-agtgtcgg---gactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
||   ||   |  | | |     |   ||| | |     |||  ||||   |   || || | |  ||  |||    | ||||    |   |  |   |||| ||| ||||| |  |||| |||||| |||| ||  |||| || || |  |||||||| || |||||||| ||||||||||||||||| || ||||| |
gt-tagatctctcaacgccttgtcaaatgctcatttaatccattagtgattgattgattgatttttttcctttttccttttttt--tttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ15061 (Selaginella moellendorffii), 3'ss of exon 1
gtgcggaaaccctagccctagccccgctgcgcgtcgcccagagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcat-----agGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
                           |  | |  |     ||  ||   | | ||  |  |||    |||  ||  |  ||     ||| |     |||| ||| | |||||   ||  |||||||||||  | | ||||||||||| |  ||||||||  |||||||| ||||| |||||||| ||||| |||||||
--------------------------gtatggggagattccagc-tccaaaatatttcgggtga----ggaaattccgccctcttgtttccttggcaagGATGAGGTCCAGCGCGTGACGCTGGAGCTGGATGCAACCAAGGAGAAGATCCGGGAGAACCTAGAGAAGATCAAGCTGAACAAGCAACTGCCTTACCTCG

upper sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ37626 (Selaginella moellendorffii), 3'ss of exon 1
gtgcggaaaccctagccctagccccgctgcgcgtcgcccagagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
||  ||  |    |   | ||| ||        |||        |  | |    ||| |     ||      ||||    || ||       |||| ||| | |||||   ||  |||||||||||  | | ||||||||||| |  ||||||||  |||||||| ||||| |||||||| ||||| |||||||
gtatgggga----aattccagctccaaaatatttcg--------ggtgaggaaattccgccctctt------gtttc---cttggca-----agGATGAGGTCCAGCGCGTGACGCTGGAGCTGGATGCAACCAAGGAGAAGATCCGGGAGAACCTAGAGAAGATCAAGCTGAACAAGCAACTGCCTTACCTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211379896|gb|FL296445.1|FL296445
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGATCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211382537|gb|FL296462.1|FL296462
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379898|gb|FL296447.1|FL296447
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCG-TCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211382536|gb|FL296461.1|FL296461
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|148969904|gb|EE020805.2|EE020805
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|31355202|gb|CD439559.1|CD439559
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|5555343|gb|AI881294.1|AI881294
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379899|gb|FL296448.1|FL296448
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGTTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379901|gb|FL296450.1|FL296450
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379910|gb|FL296459.1|FL296459
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232251|gb|FL296422.1|FL296422
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232247|gb|FL296418.1|FL296418
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGNTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|148967389|gb|EE018612.2|EE018612
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234307|gb|FL296432.1|FL296432
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232248|gb|FL296419.1|FL296419
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234317|gb|FL296442.1|FL296442
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234305|gb|FL296430.1|FL296430
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGNTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232255|gb|FL296426.1|FL296426
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211382541|gb|FL296466.1|FL296466
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234316|gb|FL296441.1|FL296441
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGTTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379904|gb|FL296453.1|FL296453
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|149100602|gb|EE186689.2|EE186689
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234310|gb|FL296435.1|FL296435
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|26456187|gb|CA827770.1|CA827770
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|149077730|gb|EE166447.2|EE166447
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211382538|gb|FL296463.1|FL296463
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAG-GTTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232258|gb|FL296429.1|FL296429
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379907|gb|FL296456.1|FL296456
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232244|gb|FL296415.1|FL296415
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|20208194|gb|BQ134283.1|BQ134283
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|148979234|gb|EE026595.2|EE026595
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379902|gb|FL296451.1|FL296451
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGNTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|71448750|gb|DR829800.1|DR829800
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232252|gb|FL296423.1|FL296423
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|74241540|gb|DT649454.1|DT649454
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379908|gb|FL296457.1|FL296457
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGTTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|67041966|gb|CO468221.1|CO468221
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|26456217|gb|CA827800.1|CA827800
EST:     GATCACCAGGGCCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: GATCACCAGGG-CCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234308|gb|FL296433.1|FL296433
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGNTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234311|gb|FL296436.1|FL296436
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379900|gb|FL296449.1|FL296449
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGNTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211382539|gb|FL296464.1|FL296464
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGTTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234314|gb|FL296439.1|FL296439
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234318|gb|FL296443.1|FL296443
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379909|gb|FL296458.1|FL296458
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|67017349|gb|CO446098.1|CO446098
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232249|gb|FL296420.1|FL296420
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGTTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|148962495|gb|EE013359.2|EE013359
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232253|gb|FL296424.1|FL296424
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGNTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232257|gb|FL296428.1|FL296428
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234306|gb|FL296431.1|FL296431
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|149089441|gb|EE178682.2|EE178682
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211379905|gb|FL296454.1|FL296454
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211382535|gb|FL296460.1|FL296460
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211382540|gb|FL296465.1|FL296465
EST:     GATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCAGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGAC
genomic: GATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGC-GTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGAC
EST: gi|148946788|gb|EC892057.2|EC892057
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTTTCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232246|gb|FL296417.1|FL296417
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211232245|gb|FL296416.1|FL296416
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGNTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGAC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGG-TCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGAC
EST: gi|211379903|gb|FL296452.1|FL296452
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|60395429|gb|DN228299.1|DN228299
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|18659139|gb|BM500175.1|BM500175
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|32803027|gb|CD955263.1|CD955263
EST:     GATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: GATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|5268468|gb|AI770432.1|AI770432
EST:     AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
EST: gi|211234309|gb|FL296434.1|FL296434
EST:     AGATCATCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAG                         GATGAGCTGCAGC-GTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC
genomic: AGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 156

GGCCGTGGACGACGCGGAGGACGACCAGCTCGCCTCCATGTCCACGGAGGAGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 149

GGCCGTGGACGACGCGGAGGACGACCAGCTCGCCTCCATGTCCACGGAGGAGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 211

GGCCGTGGACGACGCGGAGGACGACCAGCTCGCCTCCATGTCCACGGAGGAGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 125

GGCCGTGGACGACGCGGAGGACGACCAGCTCGCCTCCATGTCCACGGAGGAGATCACCAGGGCCTCCCGTCTCCTCGACAACGAGATCCGCGTCCACAAGgtgcggaaac ... gtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG
                    attgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggaaaccctagccctagccccgctgcgcgtcgcccagagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC