Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttccctctcctctacttctccctagtatacctaccaataccattcccgttttaagcactttctgttctattggtaacgagatgacacgaatggaaacctcgtttcaattatcgcgtagatgcgctcgaccatcgccaaaatttaatgttttctgggttaattttgcttctggggcttggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCCATTTCCATGCACAAGTTTATAGACCAAATACTCAGGCAGTTCTTCCGGA

Basic information

species Zea mays
transcript GRMZM2G026900_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026900_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g33230.1 (Oryza sativa), 3'ss of exon 1
gtcagttccctctcctctacttctccctagtatacctaccaataccattcccgttttaagcactttctgttctattggtaacgagatgacacgaatggaaacctcgtttcaattatcgcgtagatgcgctcgaccatcgccaaaatttaatgttttctgggttaatt--ttgcttctggggcttggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCCATTTCCATGCACAAGTTTATAGACCAAATACTCAGGCAGTTCTTCCGGA
                                                            || ||||    || |   |  |    | || | | || |    | ||| |   | |   || |||    |   |  || ||          ||||| ||    ||||  |   || |     |||||||||||||||| |||||||||   ||||||||||| |||||||||||||| |||||| | ||  | |||||| | || |||||| | || |||||||||||||| |
----------------------------------------------------------gtcagtttcccccctctctctctctc--tcaccccagtgcag---ttgttcctgctctactgttgatttttttctctctctcc----------gttttttgaacgaattgctctgtttttttttttggcttgcagCGTGTGACGAGGCCGCAGGGAGGGATCAACGAGTGGCTGCACTTCCTCCCCGTCTCGCTCCACAAGCTAATCGACCAAGTGCTGAGGCAGTTCTTCCGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759150|gb|DY688059.1|DY688059
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|148971164|gb|EE022018.2|EE022018
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|78113588|gb|DV531979.1|DV531979
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|89756950|gb|DY686759.1|DY686759
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|211049245|gb|FK977495.1|FK977495
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|148932641|gb|EC876549.2|EC876549
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|149059442|gb|EE156927.2|EE156927
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|211052318|gb|FL323620.1|FL323620
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCCACAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|211049242|gb|FK977492.1|FK977492
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|71329061|gb|DR801238.1|DR801238
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
EST: gi|148942515|gb|EC887530.2|EC887530
EST:     GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTAC                         CGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC
genomic: GTCTCGGCCTCGCCCGCGCCCTCGGCCTTGCCGACAACCTCACATTCTACgtcagttccc ... tggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgccaaaatttaatgttttctgggttaattttgcttctggggcttggcttgcagCGTGTCACGAGGCCGAGAGGAGGGATCAATGAGTGGCTGCACTTTCTCCCCATTTCCATGCACAAGTTTATAGACCAAATACTCAGGCAGTTCTTCCGGA
                       ggttaat  putative branch site (score: 4)
     aaaatttaatgttttc  TA-rich tract