Sequence
atgc intronic sequence ATGC exonic sequence...taagggtgaaaattcacaagtttgatattacatccttttgaaatgataggttccactcaagtaaactgttcttcattcaaatgcttctttgctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G026869_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g40700.2 (Oryza sativa), 3'ss of exon 1
---taagggtgaaaattcacaagtttgatattacatccttttgaaatgataggttccactcaagtaaactgttcttc--attcaaatgcttctttgctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGC
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ttatctgaatgaaattatatacgt-----attgcatcctttaaaatttgtatatatttctcaacttgcaagaccattgaatgaatatacttcttaactattgcagGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGT
upper sequence: GRMZM2G026869_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G26320.1 (Glycine max), 3'ss of exon 1
----taagggtgaaaattcacaagtttgatattacatccttttg----aaatgataggttccactcaagtaaactgttcttcattcaaatgcttctttgctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGC
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ataagaggggtgttgcgttctgattttgttattataatccataactgcagttaagagactgctttcaattgaaatgttttgcct-----ggcttccttg---ttgcagGTATAAAGATAATCGCCATGTGAGCATGGGTGCAGAGAAATGGTTGGACATTGAACTGTGGGACTCTACAAAGGAGTGCTTTAAAATGTTGAAATCACGC
upper sequence: GRMZM2G026869_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G49880.1 (Glycine max), 3'ss of exon 1
taagggtgaaaattcacaagtttgatattacatccttttgaaatgataggttccactcaagtaaactgttcttcattcaaatgcttctttgctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGC
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-----gttattatt-acgagttatgaacagtgttatttgacattgttgaaaatgctgttattgaaatgttttgcct-----gacttccttg---ttgcagGTATAAAGATAATCGCCATGTGAGCATGGGTGCAGAGAAATGGTTGGACATTGAACTGTGGGACTCTACAAAGGAGTGCTTTAAAATGTTGAAATCACGC
upper sequence: GRMZM2G026869_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT5G15390.1 (Arabidopsis thaliana), 3'ss of exon 2
taagggtgaaaattcacaagtttgatattacatccttttgaaatgataggttccactcaagtaaactgttcttcattca--aatgcttctt-tgctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGC
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---atccattagttgttgactgaaatgtaaaaaaggtttgattgcattgtgtgaattcatttaccgtgctatgtgtgtgttaatgtatattatatatgtgtagGTATAACGGAAATCGCCATGTGAGTATGGGAGCTGAGAAATGGCTGGACATTGAGTTTTGGGACACACCTAAAGAATGTTTCAAAGTTTTGAAGTCTCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6194738|gb|AW146842.1|AW146842EST: GTCATTTCCTGGGATAGCAGCAAAAG GTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACAT
genomic: GTCATTTCCTGTGATAGCAGCAAAAGgtgcagaggt ... gctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataggttccactcaagtaaactgttcttcattcaaatgcttctttgctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGC
tgcttctttgcttttt CT-rich tract
attcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taagggtgaaaattcacaagtttgatattacatccttttgaaatgataggttccactcaagtaaactgttcttcattcaaatgcttctttgctttttcagGTATAGAGACAACAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGACATTGAGATATGGAACTCACCTGCAGAATGTTTCAGTGCATTAAAAAAACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - tacatcc
- - - - - - - - - - - - - - - - - - - tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct