1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgcagggctacgcatgcagtataggcgtatagcaataattgcaaagccctaaatatatagcaaaacaaagcgatgataccatgcatgtgtgctctgctgacatgtcttaacttaacacagGTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGGCGGTGGAGGAGCTGGGCATCGACAAGGCGGTGCCGTCCAGGATCCTCGAGATCATGGGGA
species | Zea mays |
transcript | GRMZM2G026833_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGGCGCAAGGTGTCCAAGAAGCACTCCCCAGGGAAGAAGAAAGCAAAG GTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGEST: gi|149077803|gb|EE166526.2|EE166526
genomic: GCCGGCGCAAGGTGTCCAAGAAGCACTCCCAAGGGAAGAAGAAAGCAAAGgtacgcaggg ... cttaacacagGTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAG
EST: GCCGGCGCAAGGTGTCCAAGAAGCACTCCCAAGGGAAGAAGAAAGCAAAG GTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGGCGGTGGAGGAGEST: gi|148942978|gb|EC888026.2|EC888026
genomic: GCCGGCGCAAGGTGTCCAAGAAGCACTCCCAAGGGAAGAAGAAAGCAAAGgtacgcaggg ... cttaacacagGTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGGCGGTGGAGGAG
EST: CGGCGCAAGGTGGTCCAAGAAGCACTCCCCAGGGGAAGAAGAAAGCAAAG GGTGGATTGGACGCCGGEST: gi|148995824|gb|EE035059.2|EE035059
genomic: CGGCGCAAGGTG-TCCAAGAAGCACTCCCAAGGG-AAGAAGAAAGCAAAGgtacgcaggg ... cttaacacagG-TGGATTGGACGCCGG
EST: GCCGGCGCAAGGTGTCCAAGAAGCACTCCCAAGGGAAGAAGAAAGCAAAG GTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGGCGGTGGAGGAG
genomic: GCCGGCGCAAGGTGTCCAAGAAGCACTCCCAAGGGAAGAAGAAAGCAAAGgtacgcaggg ... cttaacacagGTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGGCGGTGGAGGAG
caaagcgatgataccatgcatgtgtgctctgctgacatgtcttaacttaacacagGTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGGCGGTGGAGGAGCTGGGCATCGACAAGGCGGTGCCGTCCAGGATCCTCGAGATCATGGGGA
ttaacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcagggctacgcatgcagtataggcgtatagcaataattgcaaagccctaaatatatagcaaaacaaagcgatgataccatgcatgtgtgctctgctgacatgtcttaacttaacacagGTGGATTGGACGCCGGAGCTTCACCGGAGATTCGTTCAGGCGGTGGAGGAGCTGGGCATCGACAAGGCGGTGCCGTCCAGGATCCTCGAGATCATGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA