1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcctcttcctctgacttgttcgggtcgaggagatagatatgtagcgcgctataataaccgacgccttcgccttcgttcgtctctgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
species | Zea mays |
transcript | GRMZM2G026470_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|18964263|gb|BM660906.1|BM660906
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGC-CGACCTCGAGATCG GTCCTGAAGC-CCGGCCGTCTTCAACGTCEST: gi|19272573|gb|BM888829.1|BM888829
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|101385554|gb|EB814824.1|EB814824
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGACGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGCCEST: gi|60352307|gb|DN219280.1|DN219280
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|22490296|gb|BU050219.1|BU050219
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|18964037|gb|BM660771.1|BM660771
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|19821815|gb|BQ047839.1|BQ047839
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|18964956|gb|BM661307.1|BM661307
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|87153912|gb|DY398701.1|DY398701
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCGTCGTGEST: gi|211434006|gb|FL392555.1|FL392555
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTCGTCGTG
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|60400572|gb|DN233379.1|DN233379
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|19351415|gb|BM895962.1|BM895962
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTC-AGATCG GTCCTGAAGCCCCGGCCGTCTTCAACGTCEST: gi|19057948|gb|BM736615.1|BM736615
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCC-GGCACGACCTCGAGATCG GTCCTGAAGC-CCGGCCGTCTTCAACGTCEST: gi|211493592|gb|FL394893.1|FL394893
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|18964261|gb|BM660905.1|BM660905
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|211063429|gb|FL406496.1|FL406496
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|60344571|gb|DN211544.1|DN211544
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTCEST: gi|20300766|gb|BQ163709.1|BQ163709
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
EST: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCG GTCCTGAAGCTCCGGCCGTCTTCAACGTC
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGAGATCGgtgagcctct ... tgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
atgtagcgcgctataataaccgacgccttcgccttcgttcgtctctgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
taataac putative branch site (score: 46)
ccttcgccttcgttcg putative PPT
tataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcctcttcctctgacttgttcgggtcgaggagatagatatgtagcgcgctataataaccgacgccttcgccttcgttcgtctctgctctgcagGTCCTGAAGCTCCGGCCGTCTTCAACGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC