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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acattagcaactagagaattcagtgtgaatttgtattagaatttgaacgcaacctgtgcagactagcagtctggtcttactctcttagcttggcttgcagGTCAACAAAATTCTTGAGCCAGTTCACTCCAACCCAATGGGACAAGGATCAGTGGCATCCTTTCATGGGGCCACTGCGGTCCATCCAAGTGTTGTTCATT

Basic information

species Zea mays
transcript GRMZM2G025975_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025975_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g48060.1 (Oryza sativa), 3'ss of exon 10
acattagcaactagagaattcagtgtgaatttgtattagaatttgaacgcaacctgtgcagactagcagtctggtcttactctcttagcttggcttgcagGTCAACAAAATTCTTGAGCCAGTTCACTCCAACCCAATGGGACAAGGATCAGTGGCATCCTTTCATGGGGCCACTGCGGTCCATCCAAGTGTTGTTCATT-
| ||   ||  |    | ||   |     ||   | |  |   |  |   |   ||  |  | |  |||| |        ||  |||  |     ||||||| || || ||   ||||||||||||| ||  | ||||||||||||||||| ||| | ||||||||||||||  |||||| | | |||||||||||| |  
atatgcacatttgtgcagttacattctgcttcagactgcatactatagttaggttgaacccatttacagtttaccgaccttcctttacttgcatatgcagGTGAA-AAGATCACTGAGCCAGTTCACCCCTGCACAATGGGACAAGGATCAATGGTACCCTTTCATGGGGCCGTTGCGGTTCGTTCAAGTGTTGTTCCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71304701|gb|DR788466.1|DR788466
EST:     AGATCAAGGACGACATATGAAGACTGGAGTACTTTGAAGTTTGATGAACAACAAGGACATCCTCACGCACAAGTTTGATGAACA
genomic: AGATCAAGGACGACATATGAAGACTGGAGTACTTTGAAGTTTGATGAACAACAAGGACATCCTCACGCACAAGTTTGATGAACA
EST: gi|148953109|gb|EE152590.2|EE152590
EST:     AGATCAAGGACGACATATGAAGACTGGAGTACTTTGAAGTTTGATGAACAACAAGGACATCCTCACGCACAAGTTTGATGAACA
genomic: AGATCAAGGACGACATATGAAGACTGGAGTACTTTGAAGTTTGATGAACAACAAGGACATCCTCACGCACAAGTTTGATGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgcaacctgtgcagactagcagtctggtcttactctcttagcttggcttgcagGTCAACAAAATTCTTGAGCCAGTTCACTCCAACCCAATGGGACAAGGATCAGTGGCATCCTTTCATGGGGCCACTGCGGTCCATCCAAGTGTTGTTCATT
                            gtcttac  putative branch site (score: 3)