1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttttgaaacaatggtttaggggaccatcgagttgtcttgtacttttggtgtgatgcacaatctcacataatcattactgtaattttttgtgtagatcagTTCAATCCCGACCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG
species | Zea mays |
transcript | GRMZM2G025854_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAG AEST: gi|89759099|gb|DY688027.1|DY688027
genomic: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAGgtatggttcc ... tgtagatcag-
EST: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAG AEST: gi|149095269|gb|EE180897.2|EE180897
genomic: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAGgtatggttcc ... tgtagatcag-
EST: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAG TTCAATCCCGACCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTEST: gi|211022174|gb|FL153047.1|FL153047
genomic: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAGgtatggttcc ... tgtagatcagTTCAATCCCGACCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCT
EST: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAG AEST: gi|211022174|gb|FL153047.1|FL153047
genomic: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAGgtatggttcc ... tgtagatcag-
EST: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAG A
genomic: TCGCCCGCTGCTCCTCCGCCGGGACGCCGTCAGCCGCCCAGGCGCTCAAGgtatggttcc ... tgtagatcag-
ttggtgtgatgcacaatctcacataatcattactgtaattttttgtgtagatcagTTCAATCCCGACCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG
atctcac putative branch site (score: 5)
ttttttgt putative PPT
ataatcattactgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgaaacaatggtttaggggaccatcgagttgtcttgtacttttggtgtgatgcacaatctcacataatcattactgtaattttttgtgtagatcagTTCAATCCCGACCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG
- - - aaacaat
- - - - - - - - - - - - - - - - - - - - - -ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - gtgatgc