1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggagattttggatggatgcatgtgtacatgtctctcggaaggaaaagcccgcaagatcggatcgatcacttacttggctactgctgcctgctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTGATCGAGGACAAGGGCGGCGCCATCGCGCTGATGCTGGCGTCGCTCCTGT
species | Zea mays |
transcript | GRMZM2G025528_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTGEST: gi|93014257|gb|EB639777.1|EB639777
genomic: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: CTCTGCTCACATGCCGCGAG GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTGEST: gi|37426288|gb|CF650896.1|CF650896
genomic: CTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: TCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG GTGCTCCATGAACAAGTGTCGTCCACCAGATCCAGGCTCGGCATGTTCGTGEST: gi|149072804|gb|EE161051.2|EE161051
genomic: TCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTGEST: gi|78076951|gb|DV505385.1|DV505385
genomic: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
EST: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAG GTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
genomic: ACCGTGTTCTCGCTCTCGCGTGTGCGTCTTCTCTGCTCACATGCCGCGAGgtaggtgatt ... gctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTG
aagcccgcaagatcggatcgatcacttacttggctactgctgcctgctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTGATCGAGGACAAGGGCGGCGCCATCGCGCTGATGCTGGCGTCGCTCCTGT
cacttac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggagattttggatggatgcatgtgtacatgtctctcggaaggaaaagcccgcaagatcggatcgatcacttacttggctactgctgcctgctgctgcagGTGCTCCAGGAACAAGTGCCGTCCACCAGATCCAGGCTCGGCATGTTCGTGATCGAGGACAAGGGCGGCGCCATCGCGCTGATGCTGGCGTCGCTCCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG