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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaagtaatactgaattatagattactctatgacaactactataaatcgacaatggtacagccaatatgaattgctaatgatgctacttcgatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT

Basic information

species Zea mays
transcript GRMZM2G024690_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024690_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 3'ss of exon 1
ttaagtaatactgaattatagattactctatgacaactactataaat-cgacaatggtacagccaatatgaattgctaatgatgctacttcgatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT
   | | ||  |     ||  |  |  |  ||   ||| || |   |    || ||        ||||   | |||||||  ||||| ||| ||| || ||||| |||||||  || |||||||| |||||||| |||||||| || ||||||||||||||||| ||||||||  | |||||||||||||||
-ataatgatggtagcagattcagaagacattgttgactgctttgtctgtagcagtgaaggtattaataccgaatgctaattctgctatttccatcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAGGTTTTCAATGCCAGCCCCTTCGCTTCCTCATGGCCGTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211453578|gb|FL021062.1|FL021062
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
EST: gi|148938797|gb|EC883136.2|EC883136
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
EST: gi|148967404|gb|EE018630.2|EE018630
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
EST: gi|211453584|gb|FL021068.1|FL021068
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
EST: gi|211374151|gb|FL287201.1|FL287201
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
EST: gi|211374152|gb|FL287202.1|FL287202
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
EST: gi|211453583|gb|FL021067.1|FL021067
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
EST: gi|211374159|gb|FL287209.1|FL287209
EST:     ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTG                         GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG
genomic: ACTCTCCTCCTCGCGCTCAGGGTCGACGGACGCACCGCATACTCCTGGTGgtacgcgctt ... gatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgacaatggtacagccaatatgaattgctaatgatgctacttcgatcgtgtagGATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT
                           tgctaat  putative branch site (score: 2)
                  aatatgaatt  TA-rich tract