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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggcccctttccttttctcatgcctccacccgtatcgtctgtgcattcctgctgattgggtttctctaacctttcgcgctgcttcatgtttgtctgctgtgcagGGTTCCCTCCCTTCCCGAGCGTCATGGACATCAACCAGATCCGCGAGATCCTCCCCCACAGGTGAGTGCCGGAAGCTTGATTCCTCGTCCTTGGGGTTGC

Basic information

species Zea mays
transcript GRMZM2G024482_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024482_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g12840.1 (Oryza sativa), 3'ss of exon 1
-gtcggcccctttccttt-tctcatgcctccacccgtatcgtctgtgcattcctgctgattgggtt--tctctaacctttcgcgctgc-ttcatgtttgtctgctgt-gcagGGTTCCCTCCCTTCCCGAGCGTCATGGACATCAACCAGATCCGCGAGATCCTCCCCCACAGGTGAGTGCCGGAAGCTTGATTCCTCGTCCTTGGGGTTGC
   |||  ||  |||| | ||||   |   | | ||   ||| || ||||  | | ||  || |||   |  ||||     | | |   ||| | | | |   || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                                       
gtccggttcccctcctctctctctctctctctctcgctccgtatg-gcat--cggttgcctgtgttcgccattaactgagggagatatgttcgtttattttgcctctcgcagGGTTCCCTCCCTTCCCGAGCGTCATGGACATCAACCAGATCCGCGAGATCCTGCCCCACAG---------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgattgggtttctctaacctttcgcgctgcttcatgtttgtctgctgtgcagGGTTCCCTCCCTTCCCGAGCGTCATGGACATCAACCAGATCCGCGAGATCCTCCCCCACAGGTGAGTGCCGGAAGCTTGATTCCTCGTCCTTGGGGTTGC
              ctctaac  putative branch site (score: 2)
                                       tttgtct  putative PPT