1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcaaatgttctgtggtctctccgtgcaggcgaacctttgcgcgtcgtctctctctgatagtctgttcgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGATGCGCTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTC
species | Zea mays |
transcript | GRMZM2G024354_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|37420683|gb|CF648037.1|CF648037
genomic: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|31612151|gb|CD568773.1|CD568773
genomic: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCCGCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211015164|gb|FL318464.1|FL318464
genomic: GCCGCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CCACTCGCCGCCGCCGCTGCCACCGGCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACKATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|93283374|gb|EB675638.1|EB675638
genomic: CCACTCGCCGCCGCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|149074390|gb|EE162776.2|EE162776
genomic: CACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211309973|gb|FL324772.1|FL324772
genomic: CCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|5499068|gb|AI854935.1|AI854935
genomic: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCCGCCTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTATGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|29129791|gb|CB380495.1|CB380495
genomic: GCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|22713904|gb|BU197434.1|BU197434
genomic: CGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CGCCGCCTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTATGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211240153|gb|FL362208.1|FL362208
genomic: CGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGEST: gi|211010460|gb|FL351127.1|FL351127
genomic: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCG
EST: CCACTCGCCGCCGCCGCTGCTACCGCTGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211329125|gb|FL346007.1|FL346007
genomic: CCACTCGCCGCCGCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CCGCCGCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|31355299|gb|CD439656.1|CD439656
genomic: CCGCCGCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: ACTCGCCGCCGCCGCTGCCAACGCCGCCTGCTCCCGCAGCCGCCATGG GGGCGTACAAGTATGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|5398768|gb|AI812233.1|AI812233
genomic: ACTCGCCGCCGCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: TGCTGCCGCAGCCGCCATGG GGGCGTACAAGTATGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211542993|gb|FL309294.1|FL309294
genomic: TGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|30031772|gb|CB833623.1|CB833623
genomic: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|148990298|gb|EE031897.2|EE031897
genomic: GCCGCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|30031777|gb|CB833628.1|CB833628
genomic: CTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CACCGCCGCTTGCTGCCGCAGCCGTCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211381491|gb|FL249895.1|FL249895
genomic: CACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCAGCCGCCATGG GGGCGTACAAGTATGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|60400339|gb|DN233146.1|DN233146
genomic: GCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: CTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|20300116|gb|BQ163059.1|BQ163059
genomic: CTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCCAACGCCGCCTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTATGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211183118|gb|FL314049.1|FL314049
genomic: GCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGAEST: gi|211386164|gb|FL339785.1|FL339785
genomic: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
EST: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGG GGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
genomic: GCTGCCACCGCCGCTTGCTGCCGCAGCCGCCATGGgtgagcaaat ... cgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGA
cgtgcaggcgaacctttgcgcgtcgtctctctctgatagtctgttcgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGATGCGCTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTC
ctctgat putative branch site (score: 268)
tctgttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaaatgttctgtggtctctccgtgcaggcgaacctttgcgcgtcgtctctctctgatagtctgttcgtcgcgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGATGCGCTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTC
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