Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgatgatggtgttgtgcttgccttactgggctgctggcgtcgatataatttcggtttgtgctagctacatgtgaattctaatcgatttcggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA

Basic information

species Zea mays
transcript GRMZM2G023833_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023833_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g54980.1 (Oryza sativa), 3'ss of exon 1
---attgatgat-ggtgttgtgcttgccttactgggctgctggcgtcgatataatttcggtttgtgctagctacatgtgaattctaatcgatttcggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA
    |   | || |||| ||    ||   |  ||   || |    ||| |    |    ||| |   |   || |   |  ||  || |  |||  ||||||||||||||||||||||||||||||| |||||||||||||| |||||  |||  ||||||||||| || ||||| ||||| |||||| | || ||||| ||||
ttgctaagtaatcggtggtggcgatgttctgatgtattgttatt-tcgctg-ggtcattgttggctttgtttaaaatcggcttgcaacctgttt--gtttgcagTACAAGGTGTGCTCGTGGATCGCTATCATCTTCTGCGCGCAGTCTCTGGTGAACATGAAGAATTTCGAGAATGATCTCAAGCAGTTATCCATGGCTTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211270209|gb|FL227998.1|FL227998
EST:     ATGCAGGCTT-CTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211394183|gb|FL455067.1|FL455067
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|18180983|gb|BM382193.1|BM382193
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258020|gb|FL227923.1|FL227923
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258023|gb|FL227926.1|FL227926
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265334|gb|FL227966.1|FL227966
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|18178352|gb|BM379562.1|BM379562
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255575|gb|FL227907.1|FL227907
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260453|gb|FL227935.1|FL227935
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260459|gb|FL227941.1|FL227941
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|28910393|gb|CB331416.1|CB331416
EST:     GGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATTTTTTGCGCTCAGTCGTTGGCA
genomic: GGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|18178825|gb|BM380035.1|BM380035
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATTTTTTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|28983343|gb|BQ538617.2|BQ538617
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262889|gb|FL227946.1|FL227946
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGG-GTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270210|gb|FL227999.1|FL227999
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211191450|gb|FL473724.1|FL473724
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|18181595|gb|BM382805.1|BM382805
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255574|gb|FL227906.1|FL227906
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265325|gb|FL227957.1|FL227957
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258010|gb|FL227913.1|FL227913
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265329|gb|FL227961.1|FL227961
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270198|gb|FL227987.1|FL227987
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCTTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258019|gb|FL227922.1|FL227922
EST:     ATGCAGTCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270202|gb|FL227991.1|FL227991
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258017|gb|FL227920.1|FL227920
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGG-STCCTCGTCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265337|gb|FL227969.1|FL227969
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGNGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267759|gb|FL227974.1|FL227974
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258013|gb|FL227916.1|FL227916
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGTTTCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267763|gb|FL227978.1|FL227978
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260448|gb|FL227930.1|FL227930
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270207|gb|FL227996.1|FL227996
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGG-GTCCTCGTCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258016|gb|FL227919.1|FL227919
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGNGTCCTCGGGGTCATGCTCCGC                         TACACGGTGTGCTCGTGGCTCGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCA
EST: gi|211394184|gb|FL455068.1|FL455068
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|18164035|gb|BM333874.1|BM333874
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267768|gb|FL227983.1|FL227983
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|15082772|gb|BI389456.1|BI389456
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378335|gb|FL228011.1|FL228011
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258018|gb|FL227921.1|FL227921
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|120480710|gb|EH210973.1|EH210973
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|28910395|gb|CB331417.1|CB331417
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255567|gb|FL227899.1|FL227899
EST:     ATGCAGGCTTCCTCGCCGTCGTCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260455|gb|FL227937.1|FL227937
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|14245424|gb|BG874006.1|BG874006
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255577|gb|FL227909.1|FL227909
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCN
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258021|gb|FL227924.1|FL227924
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270201|gb|FL227990.1|FL227990
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267757|gb|FL227972.1|FL227972
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|60341564|gb|DN208537.1|DN208537
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|26557746|gb|CA829981.1|CA829981
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|149083098|gb|EE172359.2|EE172359
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258009|gb|FL227912.1|FL227912
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|47962683|gb|CN845392.1|CN845392
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGATGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265331|gb|FL227963.1|FL227963
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265330|gb|FL227962.1|FL227962
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGG-GTCCTCGTCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378329|gb|FL228005.1|FL228005
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378328|gb|FL228004.1|FL228004
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255571|gb|FL227903.1|FL227903
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270199|gb|FL227988.1|FL227988
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262890|gb|FL227947.1|FL227947
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270208|gb|FL227997.1|FL227997
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270205|gb|FL227994.1|FL227994
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260452|gb|FL227934.1|FL227934
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGSTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265335|gb|FL227967.1|FL227967
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|45847829|gb|CN071772.1|CN071772
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378331|gb|FL228007.1|FL228007
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255566|gb|FL227898.1|FL227898
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378337|gb|FL228013.1|FL228013
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTGCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267762|gb|FL227977.1|FL227977
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262892|gb|FL227949.1|FL227949
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262899|gb|FL227956.1|FL227956
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|116817629|gb|EC860504.1|EC860504
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265328|gb|FL227960.1|FL227960
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCTTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267761|gb|FL227976.1|FL227976
EST:     ATGCAGGCTTCCTCGCCGTCGTCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCN
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260445|gb|FL227927.1|FL227927
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTC---GATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255579|gb|FL227911.1|FL227911
EST:     ATGCAGGCTTCCTCGCCGTCGTCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260454|gb|FL227936.1|FL227936
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262891|gb|FL227948.1|FL227948
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255570|gb|FL227902.1|FL227902
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|15208835|gb|BI430719.1|BI430719
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260458|gb|FL227940.1|FL227940
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262896|gb|FL227953.1|FL227953
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267769|gb|FL227984.1|FL227984
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267758|gb|FL227973.1|FL227973
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267771|gb|FL227986.1|FL227986
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255576|gb|FL227908.1|FL227908
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|78123320|gb|DV541704.1|DV541704
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATTTTTTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260451|gb|FL227933.1|FL227933
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270200|gb|FL227989.1|FL227989
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255565|gb|FL227897.1|FL227897
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270212|gb|FL228001.1|FL228001
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCRGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCKCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211255573|gb|FL227905.1|FL227905
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|14243409|gb|BG841119.2|BG841119
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211269759|gb|FL091747.1|FL091747
EST:     ATGCAGGCTTCCTCGCCGTCGTCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378332|gb|FL228008.1|FL228008
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262888|gb|FL227945.1|FL227945
EST:     TGCAGGCTTCCTCGCCGTCGCCTTCGG-STNCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: TGCAGGCTTCCTCGCCGTCGCCTTCGGCGT-CCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211262893|gb|FL227950.1|FL227950
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378330|gb|FL228006.1|FL228006
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|33942563|gb|CF349163.1|CF349163
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258011|gb|FL227914.1|FL227914
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265332|gb|FL227964.1|FL227964
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211258022|gb|FL227925.1|FL227925
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260447|gb|FL227929.1|FL227929
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211270204|gb|FL227993.1|FL227993
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGG-STCCTCGTCGTCATGCTCCGC                         TACAAGGTGTGCTCNTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211086072|gb|FL433939.1|FL433939
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTGTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211267770|gb|FL227985.1|FL227985
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCN
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211378334|gb|FL228010.1|FL228010
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211265336|gb|FL227968.1|FL227968
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGTTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260450|gb|FL227932.1|FL227932
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGG-STCCTCGTCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
EST: gi|211260456|gb|FL227938.1|FL227938
EST:     ATGCAGGCTTCCTCGCCGTCTCCTTCAGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGATTGGC
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCG-TTGGC
EST: gi|211265327|gb|FL227959.1|FL227959
EST:     ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGC                         TACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA
genomic: ATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 655

GAAGCCATACGCGCCGCCGAAGCTGTCGCCCCAGGACCTACCCATCGACTATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 346

GAAGCCATACGCGCCGCCGAAGCTGTCGCCCCAGGACCTACCCATCGACTATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 350

GAAGCCATACGCGCCGCCGAAGCTGTCGCCCCAGGACCTACCCATCGACTATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 635

GAAGCCATACGCGCCGCCGAAGCTGTCGCCCCAGGACCTACCCATCGACTATGCAGGCTTCCTCGCCGTCGCCTTCGGCGTCCTCGGCGTCATGCTCCGCgtacgtaacc ... cggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataatttcggtttgtgctagctacatgtgaattctaatcgatttcggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA
                                ttctaat  putative branch site (score: 635)
                              aattctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgatgatggtgttgtgcttgccttactgggctgctggcgtcgatataatttcggtttgtgctagctacatgtgaattctaatcgatttcggtttgcagTACAAGGTGTGCTCGTGGATCGCAATCATCTTCTGCGCTCAGTCGTTGGCAAACATGAAGAACTTTGAGAACGATCTGAAGCAGCTTTCTATGGCCTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- tgatgat
- - - - -ggtgttg
- - - - - - - - tgcttgc
- - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga