Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattgggtgtacatgctttactaggtccgccattgccaagttaccacgccaatgcagttattcctttaatctcacaccgtacactttcgtctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG

Basic information

species Zea mays
transcript GRMZM2G023748_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29130708|gb|CB381412.1|CB381412
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423212|gb|FL142531.1|FL142531
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428426|gb|FL142567.1|FL142567
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|28873914|gb|CB329841.1|CB329841
EST:     ACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: ACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32908493|gb|CF013306.1|CF013306
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423215|gb|FL142534.1|FL142534
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431013|gb|FL142572.1|FL142572
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|120480732|gb|EH210979.1|EH210979
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCGCCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423213|gb|FL142532.1|FL142532
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431015|gb|FL142574.1|FL142574
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|21390066|gb|BQ528115.1|BQ528115
EST:     ACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: ACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33094079|gb|CF054073.1|CF054073
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33092182|gb|CF052176.1|CF052176
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33091080|gb|CF051074.1|CF051074
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425823|gb|FL142546.1|FL142546
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32864961|gb|CF004643.1|CF004643
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428425|gb|FL142566.1|FL142566
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423210|gb|FL142529.1|FL142529
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423218|gb|FL142537.1|FL142537
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33102854|gb|CF062814.1|CF062814
EST:     ACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: ACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32927852|gb|CF032664.1|CF032664
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425816|gb|FL142539.1|FL142539
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|31910120|gb|CD651265.1|CD651265
EST:     CTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: CTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32907871|gb|CF012684.1|CF012684
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGACACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|91874847|gb|EB404804.1|EB404804
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431017|gb|FL142576.1|FL142576
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431012|gb|FL142571.1|FL142571
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|71431480|gb|DR812530.1|DR812530
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32866057|gb|CF005739.1|CF005739
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33092582|gb|CF052576.1|CF052576
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423217|gb|FL142536.1|FL142536
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33092973|gb|CF052967.1|CF052967
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431009|gb|FL142568.1|FL142568
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32864276|gb|CF003958.1|CF003958
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425829|gb|FL142552.1|FL142552
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|61118288|gb|DN559249.1|DN559249
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428414|gb|FL142555.1|FL142555
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|71427093|gb|DR808143.1|DR808143
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428422|gb|FL142563.1|FL142563
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32944998|gb|CF049817.1|CF049817
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32944968|gb|CF049787.1|CF049787
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428416|gb|FL142557.1|FL142557
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33095013|gb|CF055007.1|CF055007
EST:     GCTCTCCTCTCCCGACGACAGTTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32909384|gb|CF014196.1|CF014196
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|31557946|gb|CD527158.1|CD527158
EST:     TCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: TCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32906844|gb|CF011657.1|CF011657
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32864379|gb|CF004061.1|CF004061
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32165025|gb|CD670343.1|CD670343
EST:     ACCTCACAACCG-GAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: ACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32942884|gb|CF047703.1|CF047703
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGGAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425822|gb|FL142545.1|FL142545
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33103026|gb|CF062986.1|CF062986
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32927257|gb|CF032069.1|CF032069
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423211|gb|FL142530.1|FL142530
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425825|gb|FL142548.1|FL142548
EST:     CTCTCCTGCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCG
genomic: CTCTCCT-CTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCG
EST: gi|211428417|gb|FL142558.1|FL142558
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAANTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|5325123|gb|AI783314.1|AI783314
EST:     CTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: CTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32908830|gb|CF013643.1|CF013643
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33101936|gb|CF061896.1|CF061896
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32906792|gb|CF011605.1|CF011605
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428415|gb|FL142556.1|FL142556
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425826|gb|FL142549.1|FL142549
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428413|gb|FL142554.1|FL142554
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423209|gb|FL142528.1|FL142528
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32908661|gb|CF013474.1|CF013474
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425821|gb|FL142544.1|FL142544
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431010|gb|FL142569.1|FL142569
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33094646|gb|CF054640.1|CF054640
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33091485|gb|CF051479.1|CF051479
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCACAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431011|gb|FL142570.1|FL142570
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428418|gb|FL142559.1|FL142559
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|60338291|gb|DN205264.1|DN205264
EST:     CCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: CCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428421|gb|FL142562.1|FL142562
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32862578|gb|CF002260.1|CF002260
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|6536547|gb|AW224860.1|AW224860
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428424|gb|FL142565.1|FL142565
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32907040|gb|CF011853.1|CF011853
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425824|gb|FL142547.1|FL142547
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211423208|gb|FL142527.1|FL142527
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431018|gb|FL142577.1|FL142577
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425828|gb|FL142551.1|FL142551
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425817|gb|FL142540.1|FL142540
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32858369|gb|CD998050.1|CD998050
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211425815|gb|FL142538.1|FL142538
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32906812|gb|CF011625.1|CF011625
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|33467525|gb|CF244574.1|CF244574
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|78106842|gb|DV525260.1|DV525260
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211428423|gb|FL142564.1|FL142564
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAATCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|211431016|gb|FL142575.1|FL142575
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32908735|gb|CF013548.1|CF013548
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32911274|gb|CF016086.1|CF016086
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
EST: gi|32927915|gb|CF032727.1|CF032727
EST:     GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAG                         GAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
genomic: GCTCTCCTCTCCCGACGACAGCTACACCTCACAACCGTGAGCTCGCGAAGgtgagttcca ... ctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgccaatgcagttattcctttaatctcacaccgtacactttcgtctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG
                       atctcac  putative branch site (score: 3)
                                    cactttcgtctcttct  putative PPT
                   tttaatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattgggtgtacatgctttactaggtccgccattgccaagttaccacgccaatgcagttattcctttaatctcacaccgtacactttcgtctcttctcagGAACGCTGTTCGCAATTCCGGCGCCGGCACCATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - -tacatgc
- - - - - - - - - - - - - - -ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcacac