1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atggtttgatcattgttgtttgtcgcactagattgagtaatcagaaccgttatggattttgtcgttttcgtttgctgaaattattgatattggataacagGCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAACAGAGGATGATGTGCGCTCTACCACATC
species | Zea mays |
transcript | GRMZM2G023652_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATCAGCGGATGCGGCCGCCCCAAATGACGCAATTCCCGCTGTCCAAGA GCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAACEST: gi|31355396|gb|CD439753.1|CD439753
genomic: GGATCAGCGGATGCGGCCGCCCCAAATGACGCAATTCCCGCTGTCCAAGAgtaagtgctg ... tggataacagGCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAAC
EST: GGATCAGCGGATGCGGCCGCCCCAAATGACGCAATTCCCGCTGTCCAAGA GCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAACEST: gi|31355088|gb|CD439445.1|CD439445
genomic: GGATCAGCGGATGCGGCCGCCCCAAATGACGCAATTCCCGCTGTCCAAGAgtaagtgctg ... tggataacagGCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAAC
EST: GGATCAGCGGATGCGGCCGCCCCAAATGACGCAATTCCCGCTGTCCAAGA GCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAAC
genomic: GGATCAGCGGATGCGGCCGCCCCAAATGACGCAATTCCCGCTGTCCAAGAgtaagtgctg ... tggataacagGCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAAC
accgttatggattttgtcgttttcgtttgctgaaattattgatattggataacagGCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAACAGAGGATGATGTGCGCTCTACCACATC
tattgat putative branch site (score: 423)
tgaaattattgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtttgatcattgttgtttgtcgcactagattgagtaatcagaaccgttatggattttgtcgttttcgtttgctgaaattattgatattggataacagGCCACATGAAAACACCGACAAGCCATTGAAACAAATGCAGCCAGGGAAAACAGAGGATGATGTGCGCTCTACCACATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG