1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacggaatccgatttcgtctcactcactctactgcccaccagatgctcgtgtcgttgattttgctgctgctgctctctgtgtgtgtgtgtgtgggtgggtgggtgcagCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGCTCCTCGGCATCGACTCGCTCATCATCCCCGGTGGCGAGAGCACCACCAT
species | Zea mays |
transcript | GRMZM2G023528_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCG CGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGCEST: gi|78180241|gb|DV550614.1|DV550614
genomic: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCGgtacggaatc ... gtgggtgcagCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGC
EST: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCG CGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGCEST: gi|15100467|gb|BI396258.1|BI396258
genomic: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCGgtacggaatc ... gtgggtgcagCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGC
EST: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCG CGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGCEST: gi|6859922|gb|AW355916.1|AW355916
genomic: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCGgtacggaatc ... gtgggtgcagCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGC
EST: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCG CGCTGAGGAGGATCGGNGTGAAGGGGGTGGAGGGGCGCAAGCCAGAGCAGC
genomic: GGTGGTGGGCGTCCTCGCGCTGCAGGGATCCTACAACGAGCACATGGCCGgtacggaatc ... gtgggtgcagCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGC
gttgattttgctgctgctgctctctgtgtgtgtgtgtgtgggtgggtgggtgcagCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGCTCCTCGGCATCGACTCGCTCATCATCCCCGGTGGCGAGAGCACCACCAT
cgttgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggaatccgatttcgtctcactcactctactgcccaccagatgctcgtgtcgttgattttgctgctgctgctctctgtgtgtgtgtgtgtgggtgggtgggtgcagCGCTGAGGAGGATCGGGGTGAAGGGGGTGGAGGTGCGCAAGCCAGAGCAGCTCCTCGGCATCGACTCGCTCATCATCCCCGGTGGCGAGAGCACCACCAT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA