1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctgttcgctttgatgcgtgaaattcatggttttagcgttcttgtcttgtcgagtttgtgaccggcgcctaaccagcagatctctgccttgtgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTGAAACTGTGAATCGAAGATGAGCGTGGTGGGCTTCGACCTCGGCAATGA
species | Zea mays |
transcript | GRMZM2G023232_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211541330|gb|FL356791.1|FL356791
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211234725|gb|FL320359.1|FL320359
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211043219|gb|FL315688.1|FL315688
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211274111|gb|FL328123.1|FL328123
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|149035413|gb|EE155114.2|EE155114
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211162524|gb|FL360853.1|FL360853
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211478127|gb|FL351998.1|FL351998
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|149094893|gb|EE180472.2|EE180472
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211125412|gb|FL031450.1|FL031450
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTANATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211043113|gb|FL310620.1|FL310620
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|211180681|gb|FL313562.1|FL313562
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTEST: gi|76289597|gb|DV029165.1|DV029165
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
EST: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAG TGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
genomic: CGTTGCAGCGCTACGAGCTTCGACGGGCCGCTCGATCTCCACCTCTGAAGgtatgatcgg ... tgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGT
ttgtcgagtttgtgaccggcgcctaaccagcagatctctgccttgtgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTGAAACTGTGAATCGAAGATGAGCGTGGTGGGCTTCGACCTCGGCAATGA
gcctaac putative branch site (score: 43)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttcgctttgatgcgtgaaattcatggttttagcgttcttgtcttgtcgagtttgtgaccggcgcctaaccagcagatctctgccttgtgcgatgcagTGGCTGCTTGTGATCTAGATCTGAAAGCTGCAGTGGTTGACAGCTGAGTGTGAAACTGTGAATCGAAGATGAGCGTGGTGGGCTTCGACCTCGGCAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - atgcgtg
- - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccagcag