1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcactgtagctggtaatcttagtcccatcttcctgtttaaagcgatgacagttgtcatggtctctgattttgtcctttctatgtttgtgtgaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATGAAAGAGGCAGTTGGCAAAGCCAAAGATGGTAAACACAATGTGGTTGCT
species | Zea mays |
transcript | GRMZM2G023163_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|88753132|gb|DY537273.1|DY537273
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|20300207|gb|BQ163150.1|BQ163150
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCAT-GCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|94475699|gb|EB704657.1|EB704657
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|211053229|gb|FL127755.1|FL127755
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|28187593|gb|CB179203.1|CB179203
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|211457298|gb|FK983860.1|FK983860
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|211457295|gb|FK983857.1|FK983857
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAG-CAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|101392646|gb|EB818253.1|EB818253
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|22490347|gb|BU050270.1|BU050270
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|211457288|gb|FK983850.1|FK983850
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|19057965|gb|BM736632.1|BM736632
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCAT-GCACCAGCTCG-GTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATEST: gi|211457291|gb|FK983853.1|FK983853
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTYAAGGTGTGTATEST: gi|211457293|gb|FK983855.1|FK983855
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
EST: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGG GTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
genomic: CCCGTCGCATCGCACCAGCTCGAGTTCAAGCAACACTACCCGGAGGCAGGgtgagtgcgg ... gaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTAT
tgacagttgtcatggtctctgattttgtcctttctatgtttgtgtgaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATGAAAGAGGCAGTTGGCAAAGCCAAAGATGGTAAACACAATGTGGTTGCT
ctctgat putative branch site (score: 223)
aactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactgtagctggtaatcttagtcccatcttcctgtttaaagcgatgacagttgtcatggtctctgattttgtcctttctatgtttgtgtgaactaaaagGTGGGTTGAGCATGATCCTATGGAGATTATAGAGACTGTTAAGGTGTGTATGAAAGAGGCAGTTGGCAAAGCCAAAGATGGTAAACACAATGTGGTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -ctgtagc
- - - - - - - - - - - - - - cttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtc