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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccttgttctgatatctattaatccaatttttatttgctaatttacatgtaacatttatgttgctacaatactttggtgcagGTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCG

Basic information

species Zea mays
transcript GRMZM2G022997_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022997_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S112_67V6.1 (Physcomitrella patens), 3'ss of exon 26
-----------------gtgagtccttgttctgatatctattaatccaatttttatttgctaatttaca--tgtaacatttatgttgctacaat-actttggtgcagGTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCG
                  |    |||| |  |   || |  | ||  |  |        || || | ||  |||   | |  ||| |     ||   |||  | |||||||||||||||  | ||||||||  | ||||| ||||| |||||||||||||| |||
gtaaggaatataatttactcctaccttatcttcgaatttcctcataaatatcccgaaaacttatgttcagttgtgctaatc-tgtggtcgtgatcgtttttatacagGTATGCCAATGTTCGAACACCTGAAAGACATGTTCGCACCAGGCTTTACTTCACGTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211283788|gb|FL018042.1|FL018042
EST:     GACCAAGAAGATGAAGATGATAGAGAAACTAAATACCGATTAGATCCCAA                         GTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTT
genomic: GACCAAGAAGATGAAGATGATAGAGAAACTAAATACCGATTAGATCCCAAgtgagtcctt ... tttggtgcagGTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTT
EST: gi|211369658|gb|FL316930.1|FL316930
EST:     GACCAAGAAGATGAAGATGATAGAGAAACTAAATACCGATTAGATCCCAA                         GTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTT
genomic: GACCAAGAAGATGAAGATGATAGAGAAACTAAATACCGATTAGATCCCAAgtgagtcctt ... tttggtgcagGTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatttgctaatttacatgtaacatttatgttgctacaatactttggtgcagGTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCG
           taatttacatgtaaca  TA-rich tract