1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttgttcacaagcacaatgaatttgaactctgaatatctgctattcatgttgcttgataataatttagatcatactttgttctatggcgttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATT
species | Zea mays |
transcript | GRMZM2G022859_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292706|gb|FL181550.1|FL181550
genomic: TCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCATTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292704|gb|FL181548.1|FL181548
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGNCAEST: gi|60345888|gb|DN212861.1|DN212861
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|88754530|gb|DY538671.1|DY538671
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: TCCAGTTGTCG TTCCCAGAAACTTTAGGGTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211187611|gb|FL186089.1|FL186089
genomic: TCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292702|gb|FL181546.1|FL181546
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|33100243|gb|CF060203.1|CF060203
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292709|gb|FL181553.1|FL181553
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: GCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTC-GGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292700|gb|FL181544.1|FL181544
genomic: GCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292707|gb|FL181551.1|FL181551
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|71423686|gb|DR806128.1|DR806128
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|13389074|gb|BG462543.1|BG462543
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCG-CATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211290575|gb|FL181543.1|FL181543
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACTGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCATTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|32797911|gb|CD950147.1|CD950147
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: GATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211187618|gb|FL186096.1|FL186096
genomic: GATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|76016546|gb|DT943716.1|DT943716
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292705|gb|FL181549.1|FL181549
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211290573|gb|FL181541.1|FL181541
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292703|gb|FL181547.1|FL181547
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292708|gb|FL181552.1|FL181552
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|16379365|gb|BI992896.1|BI992896
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: GGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292701|gb|FL181545.1|FL181545
genomic: GGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|76913969|gb|DV165351.1|DV165351
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|32800774|gb|CD953010.1|CD953010
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: GATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|60350937|gb|DN217910.1|DN217910
genomic: GATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|14242746|gb|BG840531.2|BG840531
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGTCTEST: gi|211185218|gb|FL186081.1|FL186081
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211185222|gb|FL186085.1|FL186085
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|60350383|gb|DN217356.1|DN217356
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCAEST: gi|211292710|gb|FL181554.1|FL181554
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
EST: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCG TTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
genomic: AGCGGACGGGTTCGCCATGGGGTCCGAGGGATCCTCGGGTCCAGTTGTCGgtgagtagca ... ttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCA
tcatgttgcttgataataatttagatcatactttgttctatggcgttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATT
gcttgat putative branch site (score: 251)
cgttttct putative PPT
ataataatttagatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttcacaagcacaatgaatttgaactctgaatatctgctattcatgttgcttgataataatttagatcatactttgttctatggcgttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
ttttgtt
- - - - -caagcac
- - - - - - - - - - - - - - -tctgaat
- - - - - - - - - - - - - - - - - - -tctgcta
- - - - - - - - - - - - - - - - - - - - - - - - tgttgct