Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14245319|gb|BG873901.1|BG873901EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|60394682|gb|DN227552.1|DN227552EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|9953749|gb|BE640332.1|BE640332EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|60355643|gb|DN222616.1|DN222616EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|14244254|gb|BG842201.2|BG842201EST: TGTTCGGTTCGTCTCTAGCATGTTTCATCCAAACA TATATGCTGATGCAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: TGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|18170360|gb|BM340200.1|BM340200EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|31250386|gb|CD219410.1|CD219410EST: AAACAAGCCACCAACTGTTCGGTTTGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|213192747|gb|FM193959.1|FM193959EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGGTGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|60348082|gb|DN215055.1|DN215055EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|211493066|gb|FL480139.1|FL480139EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|9954028|gb|BE640611.1|BE640611EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
EST:
gi|6466737|gb|AW191397.1|AW191397EST: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACA TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
47 (upstream exon),
49 (downstream exon)
Score:
478ACATCTATAGGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
689ACATCTATAGGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
671ACATCTATAGGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG
Block sizes:
47 (upstream exon),
49 (downstream exon)
Score:
367ACATCTATAGGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctc ... attcatgcagTATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG