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gtaagtagatcaggactccgctcccactgtacctgtatccccttcccaaaccttgactgcggatcctccctcatccgccgcctccaattcctctcttcttatgaatggtgctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGCGCCAACCGCTCCCCGGCCTTCCTCAGGGACAAGGTGTACCTCAAGAAC
species | Zea mays |
transcript | GRMZM2G021674_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGGACATTCTTGATTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|71764872|gb|DR962809.1|DR962809
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|71774851|gb|DR972729.1|DR972729
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|71326369|gb|DR799871.1|DR799871
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|211204073|gb|FL034793.1|FL034793
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATTCTTGATTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|78115114|gb|DV533502.1|DV533502
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|211204074|gb|FL034794.1|FL034794
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATTCTTGATTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|211204071|gb|FL034791.1|FL034791
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGEST: gi|211204072|gb|FL034792.1|FL034792
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
EST: TGGGACATTCTTGATTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCA GAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
genomic: TGGGACATCCTTGACTCCTGCAAGAAGAAGCTCCCGCTCCAGCACCTCCAgtaagtagat ... ctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAG
ctccctcatccgccgcctccaattcctctcttcttatgaatggtgctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGCGCCAACCGCTCCCCGGCCTTCCTCAGGGACAAGGTGTACCTCAAGAAC
ttatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagatcaggactccgctcccactgtacctgtatccccttcccaaaccttgactgcggatcctccctcatccgccgcctccaattcctctcttcttatgaatggtgctgcaataagGAACAAGAAGGTGTGCGTGGATCTTTCCTGCTGGCTCGTGCAGTTCTGCAGCGCCAACCGCTCCCCGGCCTTCCTCAGGGACAAGGTGTACCTCAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC