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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacgccatgcatgtcgttcgatcttgggcttcttattttcttgctgatgatgtgtgtatcgatgtcgtcgctgcaacttgctgcatgcgtgcatgtcgtcgcagATCATGACGGACCCCGATGCGCCTAGCCCCAGCAACCCGACCATGAGGGAGTACCTCCACTG

Basic information

species Zea mays
transcript GRMZM2G021614_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021614_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g02120.1 (Oryza sativa), 3'ss of exon 1
gtacgtacgccatgcatgtcgttcgatcttgggcttcttattttcttgctgatgatgtgtgtatcgatgtcgtcgctgcaacttgct-gcatgcgtgcatgtcgtcgcagATCATGACGGACCCCGATGCGCCTAGCCCCAGCAACCCGACCATGAGGGAGTACCTCCACTG
|||  |     ||  || |   |  || |        | ||   ||  ||    |    | ||  ||   | ||| | ||| ||||| ||  ||   |   |  | |||||||||||||||||| || || |||||||| ||| ||||  ||||||||||||  ||||||||
gtatctgtat-atatatatatatatatat-atatgcatcatcacctatctatctagcaatttactgac--catcgat-caatttgctcgctcgccaacgcatgcttgcagATCATGACGGACCCGGACGCACCTAGCCCTAGCGACCCATCCATGAGGGAGTTTCTCCACTG