1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaccaaatcgcggagattcacagcttcttcttcttcttcttttcttttttgccccaagcgctgccaattgccaaggggatcccattgccaagctttgcgggaggcgcggcgggagactgaaaggcgatgcgtgtttcattcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCGTCTTGGTGCCTCATCCCGGAGCTGCTACTTCTCCCCTGGTCGTTGGTCG
species | Zea mays |
transcript | GRMZM2G021589_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAG GGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCGEST: gi|37426015|gb|CF650757.1|CF650757
genomic: CGACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAGgtaccaaatc ... ttcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCG
EST: CGACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAG GGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCGEST: gi|13557778|gb|BG549134.1|BG549134
genomic: CGACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAGgtaccaaatc ... ttcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCG
EST: GACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAG GGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCGEST: gi|22520701|gb|BU079512.1|BU079512
genomic: GACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAGgtaccaaatc ... ttcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCG
EST: CCACCCTATCCAGAATCCAG GGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCGEST: gi|76290363|gb|DV029931.1|DV029931
genomic: CCACCCTATCCAGAATCCAGgtaccaaatc ... ttcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCG
EST: CGACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAG GGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCG
genomic: CGACGACTACGCCGCAAGTCCCAACCCAACCCACCCTATCCAGAATCCAGgtaccaaatc ... ttcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCG
tttgcgggaggcgcggcgggagactgaaaggcgatgcgtgtttcattcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCGTCTTGGTGCCTCATCCCGGAGCTGCTACTTCTCCCCTGGTCGTTGGTCG
tttcattc CT-rich tract
tttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaaatcgcggagattcacagcttcttcttcttcttcttttcttttttgccccaagcgctgccaattgccaaggggatcccattgccaagctttgcgggaggcgcggcgggagactgaaaggcgatgcgtgtttcattcattccagGGACTGGACTGGGAACGCAAGGTTCTGGGAAGGCGTATGTAGGCGTTGCCGTCTTGGTGCCTCATCCCGGAGCTGCTACTTCTCCCCTGGTCGTTGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT