1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtctttgctgcccttctctctctctctctctgtctcaatcgtattctctccacctctaacgttacggtcttgttgtcttgtcatgaaacagGCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCAATGGCGGTGGGCAAGAAACGGCCACCTACTACAGCCACCAGCAGCAGGG
species | Zea mays |
transcript | GRMZM2G021573_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAG GCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCAEST: gi|71317635|gb|DR795572.1|DR795572
genomic: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAGgtctttgctg ... catgaaacagGCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCA
EST: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAG GCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCAEST: gi|78023837|gb|DV492224.1|DV492224
genomic: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAGgtctttgctg ... catgaaacagGCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCA
EST: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAG GCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCAEST: gi|4966819|gb|AI691675.1|AI691675
genomic: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAGgtctttgctg ... catgaaacagGCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCA
EST: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAG GCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCAEST: gi|71317637|gb|DR795573.1|DR795573
genomic: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAGgtctttgctg ... catgaaacagGCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCA
EST: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAG GCATGGTGCCGTCGTCCCCA
genomic: GCCTGCTATGCCCAACAAGTCCGACGACGGCACCCTCTGCAACATGGAAGgtctttgctg ... catgaaacagGCATGGTGCCGTCGTCCCCA
aatcgtattctctccacctctaacgttacggtcttgttgtcttgtcatgaaacagGCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCAATGGCGGTGGGCAAGAAACGGCCACCTACTACAGCCACCAGCAGCAGGG
ctctaac putative branch site (score: 2)
tcttgtc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttgctgcccttctctctctctctctctgtctcaatcgtattctctccacctctaacgttacggtcttgttgtcttgtcatgaaacagGCATGGTGCCGTCGTCCCCACCGAAGCTAGAGGACTTCTTGGGTGGTGGCAATGGCGGTGGGCAAGAAACGGCCACCTACTACAGCCACCAGCAGCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA