Sequence
atgc intronic sequence ATGC exonic sequence...gcatttcactgtctaaatagtacttaacagagttaaggcttttgagttcattagtttgaaatcatcgtgactgaaaaacaaaacctattgcttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGGTATCATATACCGTGATCTCAAGCCAGAGAACGTCCTTGTCCGGGAGGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G020938_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g49310.1 (Oryza sativa), 3'ss of exon 2
gcatttcactgtctaaatagtacttaacagagttaagg--cttttgagttc-attagtttgaaatcatcgtgactgaaaaacaaaacctattgcttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGGTATCATATACCGTGATCTCAAGCCAGAGAACGTCCTTGTCCGGGAGGAC
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---tgacaaatggcaagtctagcttactataatttatgaccttttgccttctactgtcttaggagccttactaataaaatgctgcattgctgtcatattacagATTCTATGTAGCAGAAATCCTCTTGGCATTAGAGTACCTGCACATGCTCGGCATCATATACCGTGATCTCAAGCCAGAAAACGTCCTCGTTCGGGAGGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28873862|gb|CB329794.1|CB329794EST: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGG ATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGG
genomic: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGGgtgagatttc ... cttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGG
EST:
gi|28930937|gb|CB334298.1|CB334298EST: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGG ATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGG
genomic: ACAAAAGATGCAGGTCCTCATGACTCCCAGCCTCCGCGCAGCGCAATCGGgtgagatttc ... cttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcattagtttgaaatcatcgtgactgaaaaacaaaacctattgcttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGGTATCATATACCGTGATCTCAAGCCAGAGAACGTCCTTGTCCGGGAGGAC
aaaaacaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatttcactgtctaaatagtacttaacagagttaaggcttttgagttcattagtttgaaatcatcgtgactgaaaaacaaaacctattgcttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGCACATGCTCGGTATCATATACCGTGATCTCAAGCCAGAGAACGTCCTTGTCCGGGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - ttcactg
- - - - - - - - - - - - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa