Sequence
atgc intronic sequence ATGC exonic sequence...ctactaatggattttgccttctcttggtggtagctttaactgcgatttcggttgtttgtttcgtttctatcagatattaataatctaaaatggtgtgcagCTTAGGTTAAAATCAAAAAAATTTGTCGGGCGGATAATACAAGGCCTACACCAGAAGGAACACCCTTTGTGCGACAGGCGAACAGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G020928_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g48960.2 (Oryza sativa), 3'ss of exon 2
---ctactaatggattttgccttct--cttggtggtagctttaactgcgatttcggttgtttgtttcgtttctatcagatattaataatctaaaatggtgtgcagCTTAGG---TTAAAATCAAAAAAAT--------TTGTCGGGCGGATAATACAAGGCCTACACCAGAAGGAACACCCTTTGTGCGACAGGCGAACAGCT---
|| ||| || | || ||| || | | | || |||||||| |||| || | |||||| |||||||||||| ||||||||||| |||||| | |||| |||||||||||||| | |||||||||| || ||||||| ||||| |||| |||||| || |
gattggtcggtgtattacaaattatgtctaggtttctactgtttcattgtcttgggttgttttcttcg-----attgaagattaatgatctaaaatggtttgcagCTTAGGTTTTTAAAACGGATCAAATAGTATTCTTTGTCGGGCGGATATTTCAAGGCCTACTCCGGAAGGAATGCCCTT-GTGCAACAGGCAAAAAAAAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149051652|gb|EE155766.2|EE155766EST: GCCAGGTGCCCAGATCTTCGTCGGGCCCTTCGCCGAAGAGCAGCCAACAG CTTAGGTTAAAATCNNNNNNNTTTGTCGGGCGGATAATACAAGGCCTACAC
genomic: GCCAGGTGCCCAGATCTTCGTCGGGCCCTTCGCCGAAGAGCAGCCAACAGgtatgcgcac ... tggtgtgcagCTTAGGTTAAAATCAAAAAAATTTGTCGGGCGGATAATACAAGGCCTACAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcggttgtttgtttcgtttctatcagatattaataatctaaaatggtgtgcagCTTAGGTTAAAATCAAAAAAATTTGTCGGGCGGATAATACAAGGCCTACACCAGAAGGAACACCCTTTGTGCGACAGGCGAACAGCT
tttctatcagatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctactaatggattttgccttctcttggtggtagctttaactgcgatttcggttgtttgtttcgtttctatcagatattaataatctaaaatggtgtgcagCTTAGGTTAAAATCAAAAAAATTTGTCGGGCGGATAATACAAGGCCTACACCAGAAGGAACACCCTTTGTGCGACAGGCGAACAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - tgccttc
- - - - - - - - - - - - tggtggt