Sequence
atgc intronic sequence ATGC exonic sequence...aaaagccttcagcagcctcgaactcaagaccaactattcaacaataacaccagctaaccaacataccctagtagatttgcatgtatggatggcacttcagTTTCTTATAACAATTCTTGCAATCCGCTCGGCCTCCCTAGATCCCTGCAAGACCAACAAATCCGCGCTGGATCCCAGAAATCCAGAAATCCGCACTGGAC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaccagctaaccaacataccctagtagatttgcatgtatggatggcacttcagTTTCTTATAACAATTCTTGCAATCCGCTCGGCCTCCCTAGATCCCTGCAAGACCAACAAATCCGCGCTGGATCCCAGAAATCCAGAAATCCGCACTGGAC
agctaac putative branch site (score: 2)
tagattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaagccttcagcagcctcgaactcaagaccaactattcaacaataacaccagctaaccaacataccctagtagatttgcatgtatggatggcacttcagTTTCTTATAACAATTCTTGCAATCCGCTCGGCCTCCCTAGATCCCTGCAAGACCAACAAATCCGCGCTGGATCCCAGAAATCCAGAAATCCGCACTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -cagcagc
- - - - - - - - - - aactcaa
- - - - - - - - - - - - - - -ccaacta
- - - - - - - - - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - - -caccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt