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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccgatctctcgcatgttttttttctttctttttcggtgcgagttcagctagattcatgctgtttttattatggtcgtttggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTTAG

Basic information

species Zea mays
transcript GRMZM2G020574_T06
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020574_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g45350.3 (Oryza sativa), 3'ss of exon 1
gtaccgatctctcgcatgttttttttctttctttttcggtgcgagttcagctagattcatgctgtttttattatggtcgtttggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTTAG
|| | |   | | ||| |      ||     ||||| || |    ||  |   ||||   |  ||| | |    ||   |||| ||| ||| ||||||||||||||| | |||||||||||||| || |||| ||||||||| |
gtgcgggatttttgcagggcggcatt-----tttttgggcgattttttggggggattttggtggttctgaccgggg--atttgttgctcagGGATGCGGAGGTGCTGCGATCGGTGGCGAGGGCCGGAAGCACGAAGGATTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148971898|gb|EE022670.2|EE022670
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|149082587|gb|EE171783.2|EE171783
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|71448689|gb|DR829739.1|DR829739
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|149031458|gb|EE286351.2|EE286351
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|149076432|gb|EE165055.2|EE165055
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|89764186|gb|DY691084.1|DY691084
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|71440172|gb|DR821222.1|DR821222
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|50331034|gb|CO526160.1|CO526160
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
EST: gi|149102431|gb|EE287794.2|EE287794
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         TGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... tggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtgcgagttcagctagattcatgctgtttttattatggtcgtttggtgcccagTGATGCGGAGGTGCTGAGGTCGGTGGCGAGGGCGGGCAGCATGAAGGATTTAG
                          tgtttttattat  TA-rich tract