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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagtttaggtgtatattttgtgcagaatttatcggtcatttgattgtttaagtgtatcaatgatattattttttcacatgtctacactgcctcgaacagCTGCTATCTTGGACACTGCAAGTAAGGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCAT

Basic information

species Zea mays
transcript GRMZM2G020574_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020574_T08 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g45350.3 (Oryza sativa), 3'ss of exon 2
ttagtttaggtgtatattttgtgcagaatttatcggtcatttgattgtttaagtgtatcaat--gata-ttattttttcacatgtctacactgcctcgaacagCTGCTATCTTGGACACTGCAAGTAAGGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCAT
    ||||    |  | ||| || |   ||   |  | |  |   |   |||   || |  |  |  | || | |||| || | |||  | || ||  |||||||||||| ||||||||||||||||||||||| ||||||||||| ||  |||||||  | ||||||||||| ||||||||||| ||||||||||| |||||
---ttttataaatgaagtttttgtaattttgtccaattaggtacatacataatactacctttttgtcagttttgttttgacctatctgtattgtcttcaacagCTGCTATATTGGACACTGCAAGTAAGGTCCTGCCACTTGTAGTGGCAGTCTCTGGACGGGTTGGTTCAGATACACCACTTATCTGCCAACAAAGTGGCAT

upper sequence: GRMZM2G020574_T08 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g45350.4 (Oryza sativa), 3'ss of exon 3
--------------------------------------------------------ttagtttaggtgtatattttgtgca-gaatttatcggtcatttgattgtttaagtgtatcaatgatattattttttc---------------acatgtctacactgcctcgaacagCTGCTATCTTGGACACTGCAAGTAAGGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCAT
                                                        | | | | | | | | |||| |  | ||| || | |    ||||     ||| ||  ||  || ||| ||  ||||                || | |||  | || ||  |||||||||||| ||||||||||||||||||||||| ||||||||||| ||  |||||||  | ||||||||||| ||||||||||| ||||||||||| |||||
gtaattgaagtccagcattaagatactacaagaatttataactttattgtagtgtgtcaatct-gtttttttttttataaatgaagtttttgtaattttgtccaattaggtacatacataatactacctttttgtcagttttgttttgacctatctgtattgtcttcaacagCTGCTATATTGGACACTGCAAGTAAGGTCCTGCCACTTGTAGTGGCAGTCTCTGGACGGGTTGGTTCAGATACACCACTTATCTGCCAACAAAGTGGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91877173|gb|EB407130.1|EB407130
EST:     TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG                         CTGCTATCTTGGACACTGCAAGTAAGGTCCTACCACTTGTAGTTGCCATCT
genomic: TGCTGTCTCAGCGCCGCTGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatct ... cctcgaacagCTGCTATCTTGGACACTGCAAGTAAGGTCCTACCACTTGTAGTTGCCATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttaagtgtatcaatgatattattttttcacatgtctacactgcctcgaacagCTGCTATCTTGGACACTGCAAGTAAGGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCAT
                                          ctgcctc  CT-rich tract
        tgtatcaatgatatta  TA-rich tract