1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgattgtccatggttccttttgcacattgtttcagtctactactcatgcaagaagaatcgttcacacgctgaagaacaagaatcggtgtgtatttgcagGGCAGGAGAGGAGGCCACTCTGACTGTCACTCTGAGCTTCGCGTCACCTGAGTACTGACGGACGACATGGGAGAAGTTGAGGACATGTACACCCAAGACG
species | Zea mays |
transcript | GRMZM2G020484_T08 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTCTGTGAATCCTTTTTGTTCTCTGCTTCGTCGGTTCGGGGTTTTAAG GGCAGGAGAGGAGGCCACTCTGACTGTCACTCTTAGCTTCGCGTCACCTGAEST: gi|78112564|gb|DV530958.1|DV530958
genomic: GATTCTGTGAATCCTTTTTGTTCTCTGCTTCGTCGGTTCGGGGTTTTAAGgtttttgcgc ... gtatttgcagGGCAGGAGAGGAGGCCACTCTGACTGTCACTCTGAGCTTCGCGTCACCTGA
EST: GATTCTGTGAATCCTTTTTGTTCTCTGCTTCGTCGGTTCGGGGTTTTAAG GGCAGGAGAGGAGGCCACTCTGACTGTCACTCTGAGCTTCACGTCACCTGA
genomic: GATTCTGTGAATCCTTTTTGTTCTCTGCTTCGTCGGTTCGGGGTTTTAAGgtttttgcgc ... gtatttgcagGGCAGGAGAGGAGGCCACTCTGACTGTCACTCTGAGCTTCGCGTCACCTGA
catgcaagaagaatcgttcacacgctgaagaacaagaatcggtgtgtatttgcagGGCAGGAGAGGAGGCCACTCTGACTGTCACTCTGAGCTTCGCGTCACCTGAGTACTGACGGACGACATGGGAGAAGTTGAGGACATGTACACCCAAGACG
tgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgattgtccatggttccttttgcacattgtttcagtctactactcatgcaagaagaatcgttcacacgctgaagaacaagaatcggtgtgtatttgcagGGCAGGAGAGGAGGCCACTCTGACTGTCACTCTGAGCTTCGCGTCACCTGAGTACTGACGGACGACATGGGAGAAGTTGAGGACATGTACACCCAAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT