Sequence
atgc intronic sequence ATGC exonic sequencegtatgtacctttccatctcacttgtgaaaactagctgacgaatatacacttccataatatcaccatggtggctgatgtcgtgttgtttctgtcagTTTGGTGAAGTTCTTAACACCTGCGTCTAGGCTCCAAGGGTACTGAGATCCTTTCCCGATCGACATGGAGTTCCGACTGCCATGCATGGTCTTGTCGACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G020309_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 7
gtatgtacctttccatctcacttgtgaaaactagctgacgaatatacacttccataatatcaccatggtggctgatgtcgtgtt-gtttctgtcagTTTGGTGAAGTTCTTAACACCTGCGTCTAGGCTCCAAGGGTACTGAGATCCTTTCCCGATCGACATGGAGTTCCGACTGCCATGCATGGTCTTGTCGACC
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gtatttacatacatatca-actaaggacaactggccattgaaaat---ttttcacaa-atcatcatg----ctgatgctatattcatctttgtcagCTTGGTGAAGTTCTTGACACCTGCATCTGGGCTCCAAGGGTACTGGGATCCTTACCCCATCGACATGGAGTTTCGACCGCCATGCATGGTCTTGTCAACC
upper sequence: GRMZM2G020309_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 7
----------------------------gtatgtacctttccatctcacttgtgaaaactagctgacga-atatacacttccata-atatcaccatggtggctgatgtcgtgttgtttctgtcagTTTGGTGAAGTTCTTAACACCTGCGTCTAGGCTCCAAGGGTACTGAGATCCTTTCCCGATCGACATGGAGTTCCGACTGCCATGCATGGTCTTGTCGACC
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gtatttacatacatatattttcacagccatgtggaattcttttttttttttttagaaaatggatagccatgtggaaatgtcttcagaaatcatcatg----ctgatgctatgttcatttc-ccagCTTGGTGAAGTTCTTGACACCTTCATCTGGGCTTCAAGGATACTGGGATCCATACCCGATCGACATGGAATTTCGACCACCATGCATGGTGTTGTCAACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatatacacttccataatatcaccatggtggctgatgtcgtgttgtttctgtcagTTTGGTGAAGTTCTTAACACCTGCGTCTAGGCTCCAAGGGTACTGAGATCCTTTCCCGATCGACATGGAGTTCCGACTGCCATGCATGGTCTTGTCGACC
ggctgat putative branch site (score: 4)
ttgtttct putative PPT
ataatatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtacctttccatctcacttgtgaaaactagctgacgaatatacacttccataatatcaccatggtggctgatgtcgtgttgtttctgtcagTTTGGTGAAGTTCTTAACACCTGCGTCTAGGCTCCAAGGGTACTGAGATCCTTTCCCGATCGACATGGAGTTCCGACTGCCATGCATGGTCTTGTCGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA