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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagtcaggttgaccagtgacccgcacgacgctagattatctaaagatttgaaacggaatcagtaattttgattttattttttttgtcccctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTTTTCCTGGGCTCAAAACAGTTTCCACGGATCACGTATAGCCGTGCGTCGT

Basic information

species Zea mays
transcript GRMZM2G019358_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211345090|gb|FL234331.1|FL234331
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211345086|gb|FL234327.1|FL234327
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211349887|gb|FL234353.1|FL234353
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211345091|gb|FL234332.1|FL234332
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|148936820|gb|EC880961.2|EC880961
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211345089|gb|FL234330.1|FL234330
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211349889|gb|FL234355.1|FL234355
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|71440788|gb|DR821838.1|DR821838
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211347484|gb|FL234337.1|FL234337
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|91055536|gb|EB165954.1|EB165954
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211349882|gb|FL234348.1|FL234348
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211345082|gb|FL234323.1|FL234323
EST:     GCTGCGCCGCTG-CACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211345087|gb|FL234328.1|FL234328
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
EST: gi|211349886|gb|FL234352.1|FL234352
EST:     GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCNN                         NNNNNTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT
genomic: GCTGCGCCGCTGCCACTCCATCTTCTCCGGCGCTTCTCGCCAGGCCGCGGgtgagcgcac ... ctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgaaacggaatcagtaattttgattttattttttttgtcccctgtcatcagGGGGGTTTAGCTGCTAGCTGCTCCACGACGACAGCAAATCAGAAGGTGCTTTTCCTGGGCTCAAAACAGTTTCCACGGATCACGTATAGCCGTGCGTCGT
                     ttttgat  putative branch site (score: 4)
                           ttttattttttttgtc  CT-rich tract
            aatcagtaattttgat  TA-rich tract