Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctctctgccgcgttacctgcgagaggaccccctcccttgttgacgcagcgacccatatcactttgctcgctcgtcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC

Basic information

species Zea mays
transcript GRMZM2G018950_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018950_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g29620.1 (Oryza sativa), 3'ss of exon 1
gtgagctctctgccgcgttacctgcgagaggaccccctcccttgttgacgcagcgacccatatcactttgctcgctcgtcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGG------ACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC
           |   | | | ||   |    | |||  | |       | | |   ||   |   |   |||  ||||  |   | ||| ||||||||||||||||||||||||||||   |||||      |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||      
-----------gtgacctcatctc--atctcatccctcctccgacgagctcggtttcctcaactgcg--gctgactcgcgct-cgcagGCTGTTCTACTTCTTCTTCGAGTCGAGGGGGAGCAAGGGGGAGGACGACCCCGTGGTGATCTGGCTGACGGGGGGCCCCGGCTGCAGCAGCGAGCTCGCG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211492802|gb|FL021489.1|FL021489
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|8368890|gb|BE051835.1|BE051835
EST:     TCGGCCACCACGCGGGGCTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: TCGGCCACCACGCGGGG-TATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211272024|gb|FL427188.1|FL427188
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCCGTGG
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCC-GTGG
EST: gi|149108851|gb|EE293004.2|EE293004
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211495691|gb|FL021505.1|FL021505
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|148944673|gb|EC889809.2|EC889809
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492812|gb|FL021499.1|FL021499
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|148944669|gb|EC889804.2|EC889804
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211495692|gb|FL021506.1|FL021506
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|149099579|gb|EE185618.2|EE185618
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211135567|gb|FL369521.1|FL369521
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|148969832|gb|EE020724.2|EE020724
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211489928|gb|FL021487.1|FL021487
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|31360633|gb|CD444990.1|CD444990
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492804|gb|FL021491.1|FL021491
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211495694|gb|FL021508.1|FL021508
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492810|gb|FL021497.1|FL021497
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492803|gb|FL021490.1|FL021490
EST:     TCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGAACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCCGGT
genomic: TCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGA-CGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCC-G-T
EST: gi|148941808|gb|EC886775.2|EC886775
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492805|gb|FL021492.1|FL021492
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|148962748|gb|EE013659.2|EE013659
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492816|gb|FL021503.1|FL021503
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211495693|gb|FL021507.1|FL021507
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492811|gb|FL021498.1|FL021498
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492814|gb|FL021501.1|FL021501
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGGACGACCCCGTGG
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGG-ACGACCCCGTGG
EST: gi|149005158|gb|EE039693.2|EE039693
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492809|gb|FL021496.1|FL021496
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|15554170|gb|BI644168.1|BI644168
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492806|gb|FL021493.1|FL021493
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|149078258|gb|EE167015.2|EE167015
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|149110190|gb|EE294008.2|EE294008
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211492807|gb|FL021494.1|FL021494
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|149088499|gb|EE177609.2|EE177609
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211334945|gb|FL422005.1|FL422005
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGT
EST: gi|211489929|gb|FL021488.1|FL021488
EST:     CTCGGCCACCACGCGGGGTATTACCGCCTCCCCAACACCCACGACGCCGG                         GATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTG
genomic: CTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 396

TCCGCATCGCGTCCTTCGCGAACGGAGGCGCCGCCACGTCGGTGGAGGACCTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 364

TCCGCATCGCGTCCTTCGCGAACGGAGGCGCCGCCACGTCGGTGGAGGACCTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 494

TCCGCATCGCGTCCTTCGCGAACGGAGGCGCCGCCACGTCGGTGGAGGACCTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 398

TCCGCATCGCGTCCTTCGCGAACGGAGGCGCCGCCACGTCGGTGGAGGACCTCGGCCACCACGCGGGGTATTACCGCCTCGCCAACACCCACGACGCCAGgtgagctctc ... tcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctcccttgttgacgcagcgacccatatcactttgctcgctcgtcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC
         tgttgac  putative branch site (score: 398)
                                         ctcgtccc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagctctctgccgcgttacctgcgagaggaccccctcccttgttgacgcagcgacccatatcactttgctcgctcgtcccgtgtagGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG