Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtccgcaatcctctattcctcatgaccgatttccatctcccctcccgctgaatcctaaccccattcgcctctccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATCGCCCGCTCCTTCGCCGCCGCCGACGCCACCGGTGATGGCGACCTTGTCA

Basic information

species Zea mays
transcript GRMZM2G018946_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018946_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g47830.1 (Oryza sativa), 3'ss of exon 1
gtctgtccgcaatcctctattcc-tcatgaccg-atttccatctcccctcccgctgaatcctaaccccattcgcctctccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATCGCCCGCTCCTTCGCCGCCGC---CGACGCCACCGGTGATGGCGACCTTGTCA
    || ||  ||| ||  || | || | |||  || ||| ||||     || | ||| |||||| || |     | |||  |  ||| |||| ||||||||||||||||||| || | || ||||||| |  |||||  |||| ||||||||||||||   || |||   |||||  |||||||  |   
----gttcgtgatcttccgtttcgtcgtaaccctatctccgtctcgttctcccccgaaccctaacgccgtcgaggtttcct-tgtcagCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89249666|gb|DY621452.1|DY621452
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCGCCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
EST: gi|78082630|gb|DV511040.1|DV511040
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
EST: gi|91049845|gb|EB160263.1|EB160263
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
EST: gi|78074317|gb|DV502751.1|DV502751
EST:     CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAG                         TCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC
genomic: CCACCGCGGCGCCCGACAATTCCGCGGTCGCCACCCCTTCTCCGGCTAAGgtctgtccgc ... ccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttccatctcccctcccgctgaatcctaaccccattcgcctctccgatcgcagTCGCGTGACCCCCGCTTCTCCGGATCCGCCTCCACCACCGTTCGTCACATCGCCCGCTCCTTCGCCGCCGCCGACGCCACCGGTGATGGCGACCTTGTCA
                         tcctaac  putative branch site (score: 1)
                               ccccattcgcctctcc  CT-rich tract