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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctgcccgctcctgcgctcctcctcgccctgtttttttctagggttttagcttctctgtgtctgcgtactagttcctcactgtttccccccttcgttttcttattatgggagcggagcagGCCAATGGGATGGCGATTGCGTTGGCGGCGGGGTTCGTGGGCCAG

Basic information

species Zea mays
transcript GRMZM2G018697_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018697_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g08170.1 (Oryza sativa), 3'ss of exon 1
------------gtagctgcccgctcctgcgctc-ctcctcgccctgtttttttctagggttttagcttctctgtg------tctgcgtactagttcctcactgt---ttccccccttcgttttcttattatgggagcg--gagcagGCCAATGGGATGGCGATTGCGTTGGCGGCGGGGTTCGTGGGCCAG-------------------------------------------------------
            |   || || |||||| ||||| |||| |  |||   |  | ||   | |   ||| |  || |      | |   | ||||    | |  |    ||  | | |   ||  |||  | |||  |    |||||||| ||||||  |||||| | ||||||||||||||||||||| |||                                                       
gtgcgtccccgcgcttct-cctgctcctccgctctctcccccaccttgctgctgctgctgctgctgctgcagtggggaaaggtttttctcctagggttttagagaaaattttctcatggcttggcttggtttggtggtctcgagcagGCGAATGGGGCGGCGATAGGGTTGGCGGCGGGGTTCGTGGGGCAGGGGGCGGCGAGGGAGGCTGCCGGGCTGGTGGTCGACATGATTCGCCAGAAGAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactagttcctcactgtttccccccttcgttttcttattatgggagcggagcagGCCAATGGGATGGCGATTGCGTTGGCGGCGGGGTTCGTGGGCCAG
        tcctcac  putative branch site (score: 2)
                              ttttcttattat  TA-rich tract