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...cctatccctttgccatccacttatatgggcttttgagattttcctgggatttatttgaataacttaattgggccaagcccataaatcctaacactaacagCTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGCAACTGCACGGCGATTTCGTCACCAAGATCTCTGACATGGTCTGGAGGAG
species | Zea mays |
transcript | GRMZM2G018678_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAG CTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGCEST: gi|76937479|gb|DV175162.1|DV175162
genomic: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAGgtattcttac ... acactaacagCTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGC
EST: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAG CTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGCEST: gi|74236095|gb|DT644009.1|DT644009
genomic: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAGgtattcttac ... acactaacagCTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGC
EST: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAG CTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGCEST: gi|91871072|gb|EB401227.1|EB401227
genomic: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAGgtattcttac ... acactaacagCTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGC
EST: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAG CTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGC
genomic: GCCCCTCCCGCGGACCTCGGATCTCCGCTACTCCTCCCTCGAAGCCCAAGgtattcttac ... acactaacagCTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGC
gggatttatttgaataacttaattgggccaagcccataaatcctaacactaacagCTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGCAACTGCACGGCGATTTCGTCACCAAGATCTCTGACATGGTCTGGAGGAG
tcctaac putative branch site (score: 16)
ttatttgaataactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatccctttgccatccacttatatgggcttttgagattttcctgggatttatttgaataacttaattgggccaagcccataaatcctaacactaacagCTGGGGACACTATTGGGGAGGAGGTCCTGCGCATGTTCCTTGAGGAGAGGCAACTGCACGGCGATTTCGTCACCAAGATCTCTGACATGGTCTGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - -catccac
- - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - ttcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccaagc