1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaccgggctcacctcccccagtccattggattcgccgctcggggagcgccccgggtgtttttcgtctcgatttggctaacaattcgatctatcccttttctcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGCAACTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTAC
species | Zea mays |
transcript | GRMZM2G018447_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211424407|gb|FL084942.1|FL084942
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCTACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211424413|gb|FL084948.1|FL084948
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211424415|gb|FL084950.1|FL084950
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211421809|gb|FL084936.1|FL084936
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211424416|gb|FL084951.1|FL084951
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|76018971|gb|DT946141.1|DT946141
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|89756005|gb|DY686208.1|DY686208
genomic: CCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211421806|gb|FL084933.1|FL084933
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211424414|gb|FL084949.1|FL084949
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|29947193|gb|CB816528.1|CB816528
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|76288121|gb|DV027689.1|DV027689
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211421814|gb|FL084941.1|FL084941
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211421802|gb|FL084929.1|FL084929
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCTACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211424417|gb|FL084952.1|FL084952
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211421805|gb|FL084932.1|FL084932
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCTACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211421810|gb|FL084937.1|FL084937
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|116821688|gb|EC865015.1|EC865015
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATAGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGEST: gi|211421808|gb|FL084935.1|FL084935
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
EST: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
genomic: CAAGAACCCAAGCCCCCACCATGACAAGCTCCTCCTCTCCTTCCCGAAAGgtaccgggct ... tcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGG
tgtttttcgtctcgatttggctaacaattcgatctatcccttttctcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGCAACTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTAC
ggctaac putative branch site (score: 2)
ttcgatctatcccttt putative PPT
taacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgggctcacctcccccagtccattggattcgccgctcggggagcgccccgggtgtttttcgtctcgatttggctaacaattcgatctatcccttttctcctgtgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAACTCGCCGAGTGGCAACTCAGCCCCCCTGCTGGATTCAAGCACAAGGTCTCCGATAACCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA