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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtagtgaggaagacaatactcatgtcattgcgatactcactgaatcaatgaggaatatgtctaaaattgtctgttggttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC

Basic information

species Zea mays
transcript GRMZM2G018375_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018375_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g34570.1 (Oryza sativa), 3'ss of exon 1
gtcagtagtgaggaagacaatactcatgtcattgcgatactcactgaatcaatgaggaatatgtctaaaattgtctgttggttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC
    |||   |  || | || |   |  || |  | ||| || ||    |  |   | || ||   |||        || ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||| |||||| | ||||| || ||   | 
----gtacgcaccaaaaaaacatcaaactcttcaccataatctctcccccgttcttggatttgaacaaa--------ttcgttgttgcagGGCCCGACGTTCGGAGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTGAAGGCGCTCGGCCGGCCGAACGCCATCGACGGCACGATCAAGA

upper sequence: GRMZM2G018375_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G39740.1 (Glycine max), 3'ss of exon 1
---------------gtcagtagtgaggaagacaa--tactcatgtcattgcgatactcac--tgaatcaatgaggaatatgtctaaaattgtctgttggttgt---tgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC-
                  | |  ||      |  |  ||   || | |||   || | ||   |   || |     || || |  || | | | |||||||  |   ||||||| ||||||||||| || |||||||| || || ||||||||||| ||  ||||| | |||||  |||| |||  ||| ||  | || || ||  ||| |  
gtatgcagtttctattctaatcttggtcctaattacttaagtatattattattattcacaagatttgtctacataaaacattttcaataatat-tgttggtgatatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCGTTGGGGAGGAACAATGCAATTGATGGAAC-GTGTGGAG

upper sequence: GRMZM2G018375_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G27990.1 (Glycine max), 3'ss of exon 1
---------------gtcagtagtgaggaagacaatactcatgtcattgcgatactcactgaatcaatgaggaatatgtctaaaattgtctgttggttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC-
                | | |   | |   ||  ||| | | || ||   || | |    |||  ||| ||| || || | | | |||| ||  | |  |||||||| ||||||||||| || |||||||| || || ||||||||||| ||  ||||| | |||||  |||| |||  ||| ||  | || || ||  ||| |  
aacatcttaaatgaatttaatttagtgagtgaacataataaagtgatgaggaaaat----gaaggaattagggatgtgacgatatttgt-tggggatatttgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCTTTGGGTAGGAACAATGCAATTGATGGAAC-GTGTGGAG

upper sequence: GRMZM2G018375_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ04508 (Selaginella moellendorffii), 3'ss of exon 1
gtcagtagtgaggaagacaatactcatgtcattgcgatactcactgaatcaatgaggaatatgtctaaaattgtctgttggttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC
                              |  | | |  |   |   ||  ||  |  |  |||| ||   || | | ||||    ||||| ||||| ||||| || ||||||||||| || |||||||| || ||| |||| |||||| | ||||||| |||||| ||| | || || ||  |   | 
----------------------------gtaaagaggtttttgttctttctttgttg--tccgtcttaa--cgtttctcggtt---ccagGGGCCGACTTTTGGAGCGATGATGATCTCTGGGCAGAAGGCAGCTCACTTGGCTCTCAAGTCACTGGGCATGCCCAATGCCATCGATGGAACTCTCAAGG

upper sequence: GRMZM2G018375_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ26284 (Selaginella moellendorffii), 3'ss of exon 1
gtcagtagtgaggaagacaatactcatgtcattgcgatactcactgaatcaatgaggaatatgtctaaaattgtctgttggttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC
                              |  | | |  |   |   ||  ||  |  |  |||| ||   || | | ||||    ||||| ||||| ||||| || ||||||||||| || |||||||| || ||| |||| |||||| | ||||||| |||||| ||| | || || ||  |   | 
----------------------------gtaaagaggtttttgttctttctttgttg--ttcgtcttaa--cgtttctcggtt---ccagGGGCCGACTTTTGGAGCGATGATGATCTCTGGGCAGAAGGCAGCTCACTTGGCTCTCAAGTCACTGGGCATGCCCAATGCCATCGATGGAACTCTCAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88755617|gb|DY539758.1|DY539758
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|91867412|gb|EB399680.1|EB399680
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|14243936|gb|BG841576.2|BG841576
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|88758124|gb|DY542265.1|DY542265
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATTTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|8103197|gb|AW927852.1|AW927852
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|101401740|gb|EB822522.1|EB822522
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71758441|gb|DR956378.1|DR956378
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|154130400|gb|EC872234.2|EC872234
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148952072|gb|EC897862.2|EC897862
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211199928|gb|FL305439.1|FL305439
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71426442|gb|DR807492.1|DR807492
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149071088|gb|EE159489.2|EE159489
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50332864|gb|CO527990.1|CO527990
EST:     CGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: CGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71759095|gb|DR957032.1|DR957032
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149072923|gb|EE161181.2|EE161181
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76014274|gb|DT941444.1|DT941444
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148960045|gb|EE153287.2|EE153287
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATTTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211368948|gb|FK948427.1|FK948427
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78087834|gb|DV516227.1|DV516227
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76915035|gb|DV165793.1|DV165793
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|94477670|gb|EB706628.1|EB706628
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|101386717|gb|EB815375.1|EB815375
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149107306|gb|EE189188.2|EE189188
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78120694|gb|DV539078.1|DV539078
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76911804|gb|DV164441.1|DV164441
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|74246464|gb|DT654378.1|DT654378
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|91877725|gb|EB407682.1|EB407682
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71444998|gb|DR826048.1|DR826048
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76280800|gb|DV020368.1|DV020368
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|88755618|gb|DY539759.1|DY539759
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGG
EST: gi|149031175|gb|EE154842.2|EE154842
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71764097|gb|DR962034.1|DR962034
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78109103|gb|DV527520.1|DV527520
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50329010|gb|CO524136.1|CO524136
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCCCCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|5740658|gb|AI948348.1|AI948348
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149096147|gb|EE181839.2|EE181839
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78082541|gb|DV510953.1|DV510953
EST:     CCCCC-GGATG                         GGCCCGACGTTTGGCGCCATGATGATTTCCGGCCAGAAGGCGGCGCACCTG
genomic: CCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71770935|gb|DR968872.1|DR968872
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|101383481|gb|EB813796.1|EB813796
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|101400809|gb|EB822102.1|EB822102
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|5499295|gb|AI855162.1|AI855162
EST:     TGATCGTCACCGGAATGGAGGTCCCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76283438|gb|DV023006.1|DV023006
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149108016|gb|EE292371.2|EE292371
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|116823733|gb|EC867292.1|EC867292
EST:     TGATCGTCACCGGAAT-GAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|14243757|gb|BG841388.2|BG841388
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211420636|gb|FL480901.1|FL480901
EST:     TGATCGTCACCGGAATGGATGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148965446|gb|EE016252.2|EE016252
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|74232289|gb|DT640203.1|DT640203
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71445175|gb|DR826225.1|DR826225
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76284193|gb|DV023761.1|DV023761
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|110192816|gb|EC874714.1|EC874714
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71764098|gb|DR962035.1|DR962035
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|16378354|gb|BI992400.1|BI992400
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71759840|gb|DR957777.1|DR957777
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71765511|gb|DR963448.1|DR963448
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|101382117|gb|EB813114.1|EB813114
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCCCCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149096148|gb|EE181840.2|EE181840
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71310746|gb|DR791666.1|DR791666
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|101382119|gb|EB813115.1|EB813115
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76288473|gb|DV028041.1|DV028041
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50337569|gb|CO532695.1|CO532695
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78080627|gb|DV509039.1|DV509039
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76285409|gb|DV024977.1|DV024977
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|15057241|gb|BI361213.1|BI361213
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|84969308|gb|DW467748.1|DW467748
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211121913|gb|FL438327.1|FL438327
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76014265|gb|DT941435.1|DT941435
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148961532|gb|EE012284.2|EE012284
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATTTCCGGCCAGAAGGGGGCGCCCCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71327861|gb|DR800558.1|DR800558
EST:     TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 13

CACCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTTCCCGGCATGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 120

CACCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTTCCCGGCATGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 124

CACCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTTCCCGGCATGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtg ... gttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatactcactgaatcaatgaggaatatgtctaaaattgtctgttggttgttgcagGGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTCAAGGCCCTGGGCAGGCCCAACGCCGTGGACGGGACCATGTCGC
                      aatatgtctaaaatt  TA-rich tract