Sequence
atgc intronic sequence ATGC exonic sequencegtacgcgacagtggagatattcattgacactagtaactttaccagcttgtttgcccataagctaacagtatatgaggctttcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G017525_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g44340.1 (Oryza sativa), 3'ss of exon 5
gtacgcgacagtggagatattcattgacactagtaactttaccagcttgtttgcccataagctaacagtatatgaggctttcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
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gtataagacaacagaaatagcagtcatttgcaaagcatgtacca-catgttt-------agcta-cagtatataagtatttg-----gcactctgcagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAAAAAGTAGCTGAGGTTGAGAAGCTCACTCAGACTGTCAGAGAGCTCGAAGAAGCTGTTCTTGCTG
upper sequence: GRMZM2G017525_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G09390.1 (Glycine max), 3'ss of exon 5
gtacgcgacagtggagatattcattgacactagtaactttaccagcttgtttgc-ccataa---gctaacagtatatgagg-ctttcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
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----------gtattgcaatcttgtatgattattctctctccaggtgtgtgagaaccataatatgtaacttctatcttcggactttgccatcaacttcctcagGAAGAAAATAAAATTTTGGACAAAATGCATAGACAGAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTTAGAGAACTAGAAGAGGCTGTCCTTGCAG
upper sequence: GRMZM2G017525_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G26540.1 (Glycine max), 3'ss of exon 5
gtacgcgacagtggagatattcattgacactagtaactttaccagcttgtttgc-ccataa---gctaacagtatatgaggctttcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
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----------gtattgcaatcttgtatgattattctctctcctggtgtgtgagaatcataatatgtaacttctatctctgactttgccatcaacttcctcagGAAGAAAATAAAATTTTGGACAAAATGCATAGACAGAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTTAGAGAGCTAGAAGAGGCTGTCCTTGCAG
upper sequence: GRMZM2G017525_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G24764.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacgcgacagtggagatattcattgacactagtaactttaccagcttgtttgcccataagctaacagtatatgaggctttcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
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--gttctgtggtcgccatctt-gttctttgtatttacttaatctatggatttgccaacaatctgattaacttta----ttttctgtttta-------gGAAGAAAACAAAATTCTAGATAGAATGCATAGGCAGAAGGTTGCTGAAGTGGAAAAGCTTACTCAGACAGTACGAGAGCTAGAAGAGGCTGTTCTTGCAG
upper sequence: GRMZM2G017525_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------------------gtacgcgacagtggagatattcattgacactagt---aactttaccagcttgtttgcccataagctaac-------agtatatgaggctt-tcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
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gtattgtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtat--actagGAAGAAAATAAAATTTTGGATAAGATGCATCGCCAAAAGGTTGCAGAGGTTGAAAAACTAACCCAAACTGTAAGGGAGCTTGAAGAGGCTGTTCTGGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67023844|gb|CO452593.1|CO452593EST: ATCTGCAAAACAAAAACCAAGAGTTGATGAAACAGATTGAGATATGCCAG GAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTT
genomic: ATCTGCAAAACAAAAACCAAGAGTTGATGAAACAGATTGAGATATGCCAGgtacgcgaca ... caccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTT
EST:
gi|24765000|gb|CA400161.1|CA400161EST: ATCTGCAAAACAAAAACCAAGAGTTGATGAAACAGATTGAGATATGCCAG GAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTT
genomic: ATCTGCAAAACAAAAACCAAGAGTTGATGAAACAGATTGAGATATGCCAGgtacgcgaca ... caccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcttgtttgcccataagctaacagtatatgaggctttcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
agctaac putative branch site (score: 2)
agtatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtacgcgacagtggagatattcattgacactagtaactttaccagcttgtttgcccataagctaacagtatatgaggctttcctgttgcaccaaacagGAAGAGAACAAAATCTTGGATAGAATGCACCGCCAGAAAGTTGCTGAGGTTGAAAAGCTCACGCAGACTGTCAGAGAGCTAGAAGAATCTGTTCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT