1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactatctctgtcctgattcagagtttctagctgggactggggggaagtgcacgatgattcggtctctcagctccgcggggttcttttttcctgtttcagGTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAAGAG
species | Zea mays |
transcript | GRMZM2G017386_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTGCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTG GTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAAEST: gi|148953482|gb|EE152987.2|EE152987
genomic: TTCTGCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTGgtactatctc ... cctgtttcagGTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAA
EST: TTCTGCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTG GTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAAEST: gi|101399075|gb|EB821410.1|EB821410
genomic: TTCTGCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTGgtactatctc ... cctgtttcagGTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAA
EST: GCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTG GTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAAEST: gi|211331607|gb|FL017224.1|FL017224
genomic: GCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTGgtactatctc ... cctgtttcagGTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAA
EST: GCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTG GTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAA
genomic: GCTGTCTATCCCCGCGCCGCGCGAGGTTGCTGCCTTGGCCTTGCTGgtactatctc ... cctgtttcagGTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAA
aagtgcacgatgattcggtctctcagctccgcggggttcttttttcctgtttcagGTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAAGAG
ttcttttttcctgttt CT-rich tract
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatctctgtcctgattcagagtttctagctgggactggggggaagtgcacgatgattcggtctctcagctccgcggggttcttttttcctgtttcagGTTCTTTGCTTGTGGGATGAGTGGAAGGAAGGCCGGTCCTCGCTGCAGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG