1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgtgcggaaacagtcttctgtgaatccatgcatgcatggtttacttatgccatgcatcgatctcactttctggcatggtcgtctctggtatcgatctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCGGCGCCACACGGCAGATGAGTCTCAGGAAGCTCATTTGGGTCGTCACAA
species | Zea mays |
transcript | GRMZM2G017382_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAG GAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCEST: gi|37380000|gb|CF626776.1|CF626776
genomic: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAGgtgcgtgcgg ... atctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTC
EST: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAG GAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCEST: gi|37381809|gb|CF627801.1|CF627801
genomic: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAGgtgcgtgcgg ... atctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTC
EST: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAG GAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCEST: gi|148966171|gb|EE017113.2|EE017113
genomic: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAGgtgcgtgcgg ... atctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTC
EST: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAG GAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCEST: gi|37380885|gb|CF627285.1|CF627285
genomic: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAGgtgcgtgcgg ... atctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTC
EST: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAG GAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCEST: gi|37384501|gb|CF629328.1|CF629328
genomic: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAGgtgcgtgcgg ... atctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTC
EST: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAG GAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTC
genomic: TCGGGCCTGACCGAACTGCCACCATGGAGACCCTCATGAACCTCCTGCAGgtgcgtgcgg ... atctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTC
gccatgcatcgatctcactttctggcatggtcgtctctggtatcgatctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCGGCGCCACACGGCAGATGAGTCTCAGGAAGCTCATTTGGGTCGTCACAA
atctcac putative branch site (score: 10)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgcggaaacagtcttctgtgaatccatgcatgcatggtttacttatgccatgcatcgatctcactttctggcatggtcgtctctggtatcgatctgtgcagGAGACGGCACTGAACCATGTGATGTGCTCTGGGCTCGCCGGAGACGGTTTCGGCGCCACACGGCAGATGAGTCTCAGGAAGCTCATTTGGGTCGTCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA