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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgcatcctacatctactactcggtctatctgtttcatttatgctgctggatggaagaggaattcagagcagtgcttacaggtgccctttgttttgcagGCTTAGTTTCAGATGCTTTCCATCTCACCTTTGGATGCGGCTTGTTAACTTTCTCATTGTTTGCTATGGCTGCATCCCGAACCAAGCCTGATAACCTCTA

Basic information

species Zea mays
transcript GRMZM2G017365_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 3'ss of exon 1
attgcatcctacatctactactcggtc-tatctgtttcatttatgctgctggatggaagaggaattcagagcagtgcttacaggtgccctttgttttgcagGCTTAGTTTCAGATGCTTTCCATCTCACCTTTGGATGCGGCTTGTTAACTTTCTCATTGTTTGCTATGGCTGCATCCCGAACCAAGCCTGATAACCTCTA
                     |||||  ||    |   | |  | |||||      |      | |||   || | |  ||   |  || ||  ||| ||||| |||| || ||||||||||||||||||||||| || ||  |  | |||||||| |||||||| |||||||| ||| ||||||| |||||| |||||||
--------------------gtcggtaatactaatactactgctactgctactgctactcattactcatctcaat-cacactcttctccattcgttt-cagGCCTAGTCTCCGATGCTTTCCATCTCACCTTTGGTTGTGGAATCCTCACTTTCTCCTTGTTTGCCATGGCTGCCTCCAGAACCAAACCTGATCACCTCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctggatggaagaggaattcagagcagtgcttacaggtgccctttgttttgcagGCTTAGTTTCAGATGCTTTCCATCTCACCTTTGGATGCGGCTTGTTAACTTTCTCATTGTTTGCTATGGCTGCATCCCGAACCAAGCCTGATAACCTCTA
                            tgcttac  putative branch site (score: 2)
                                        ccctttgtttt  putative PPT
                                           tttgtttt  TA-rich tract