Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacgtgacgaccacagatccggcggccgcgcgctagcctctgtcggtgctcatcctgctgctcgccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCATCAGCGACGAGCTCATGCTGGACGGCAACCCGCGCCTGAACCTGGCGTCC

Basic information

species Zea mays
transcript GRMZM2G017110_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017110_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g36320.2 (Oryza sativa), 3'ss of exon 1
-----------------------gtgacgtgacgaccacagatccggcggccgcgcg--ctagcctctgtcggt-gctcatcctgctgctcgccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCATCAGCGACGAGCTCATGCTGGACGGCAACCCGCGCCTGAACCTGGCGTCC
                         |    |       |  ||  ||  ||||||||     |      ||| | | |      | || |    | | |||||| | |||||||||||| |||||||||| ||||||||||| | |||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||
tgctggctgcatgctccgatctctcggttgggttttggccaatttgggcgccgcgcggggctgtgctgatcgatcgattgcttcgttgttga--gtgtgcagGTTCAGGATGCCGGAGCAGTCGATCCCGAGGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGGAACCCGCGGCTGAACCTGGCGTCC

upper sequence: GRMZM2G017110_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g36320.3 (Oryza sativa), 3'ss of exon 1
------------------------gtgacgtgacgaccacagatccggcggccgcgcgc--tagcctctgtcggt-gctcatcctgctgctcgccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCATCAGCGACGAGCTCATGCTGGACGGCAACCCGCGCCTGAACCTGGCGTCC
                          |    |       |  ||  ||  ||||||||     |      ||| | | |      | || |    | | |||||| | |||||||||||| |||||||||| ||||||||||| | |||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||
gtgctggctgcatgctccgatctctcggttgggttttggccaatttgggcgccgcgcggggctgtgctgatcgatcgattgcttcgttgttga--gtgtgcagGTTCAGGATGCCGGAGCAGTCGATCCCGAGGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGGAACCCGCGGCTGAACCTGGCGTCC

upper sequence: GRMZM2G017110_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S68_116V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------gtgacgtgacgaccacagatccggcggccgc-gcgctag---cctctgtcggt-----gctcatcct-gctgctcgccgcg-cgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCATCAGCGACGAGCTCATGCTGGACGGCAACCCGCGCCTGAACCTGGCGTCC
              | || |  | | |     | ||   |  ||   | | |   | | || ||||     ||| |   |  ||| ||    |    ||||| |   || || |||||| | |  ||   ||| || ||| | |||||||||||||||||||||||| |||| |||||||| ||| ||||  ||||||||
tggagaggagaggcttacattgcaagcttttgttcgtttggggctatgttggatacatttggcggtattgtgctaactatcactgttcttttcaatccagGTTCACCATTCCCGAGCGGGCAACACCCAAGGATGCCGCGTACCAGATCATCAGCGACGAGCTCATGTTGGATGGCAACCCTCGCTTGAATTTGGCGTCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76936882|gb|DV174942.1|DV174942
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211514878|gb|FL220118.1|FL220118
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|74241357|gb|DT649271.1|DT649271
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|149105996|gb|EE291637.2|EE291637
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|86466862|gb|DY233232.1|DY233232
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCATATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148944713|gb|EC889852.2|EC889852
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211514882|gb|FL220122.1|FL220122
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211514875|gb|FL220115.1|FL220115
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|149099328|gb|EE185365.2|EE185365
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148991152|gb|EE032610.2|EE032610
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|101390849|gb|EB817360.1|EB817360
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|94472313|gb|EB701271.1|EB701271
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|78110993|gb|DV529390.1|DV529390
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211517233|gb|FL220130.1|FL220130
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|40336127|gb|CK370197.1|CK370197
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148987533|gb|EE031396.2|EE031396
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211517231|gb|FL220128.1|FL220128
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|74240337|gb|DT648251.1|DT648251
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|74241318|gb|DT649232.1|DT649232
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211514886|gb|FL220126.1|FL220126
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211512520|gb|FL220103.1|FL220103
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148973017|gb|EE024069.2|EE024069
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148931503|gb|EC874533.2|EC874533
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211512519|gb|FL220102.1|FL220102
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|74241085|gb|DT648999.1|DT648999
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|71768888|gb|DR966825.1|DR966825
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148958865|gb|EE010447.2|EE010447
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|149088859|gb|EE177993.2|EE177993
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211512527|gb|FL220110.1|FL220110
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148973269|gb|EE024349.2|EE024349
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211514876|gb|FL220116.1|FL220116
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211512529|gb|FL220112.1|FL220112
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148971717|gb|EE022449.2|EE022449
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|71316103|gb|DR794738.1|DR794738
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|149111127|gb|EE294623.2|EE294623
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|149029946|gb|EE286282.2|EE286282
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211514883|gb|FL220123.1|FL220123
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|71435275|gb|DR816325.1|DR816325
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|71436524|gb|DR817574.1|DR817574
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|149081823|gb|EE170981.2|EE170981
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|71313551|gb|DR793350.1|DR793350
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|71769654|gb|DR967591.1|DR967591
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|71319966|gb|DR796746.1|DR796746
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|91050167|gb|EB160585.1|EB160585
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|91877926|gb|EB407883.1|EB407883
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211512525|gb|FL220108.1|FL220108
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148960455|gb|EE011049.2|EE011049
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|211514874|gb|FL220114.1|FL220114
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
EST: gi|148954390|gb|EC899806.2|EC899806
EST:     GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCG                         GTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT
genomic: GCGGTGGCCTCCACCTTCGCGTCGCGCTACGTGCGCGAGCGCCTGCCGCGgtgacgtgac ... ccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtgacgtgacgaccacagatccggcggccgcgcgctagcctctgtcggtgctcatcctgctgctcgccgcgcgcagGTACCGGATGCCGGAGCGGTCGATCCCGCGGGAGGCGGCGCAGCAGATCATCAGCGACGAGCTCATGCTGGACGGCAACCCGCGCCTGAACCTGGCGTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA