1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaggcatctttaggtttatttcacgcgcgcgcagcgcaccattattagtcgttttcagctcgggctcggatttaatttgcgtgtatatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGAAGGGTGGAGTCGCAGCTGAACT
species | Zea mays |
transcript | GRMZM2G017087_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGEST: gi|211382575|gb|FK954728.1|FK954728
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGEST: gi|21987869|gb|BQ779397.1|BQ779397
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGEST: gi|211385208|gb|FK954740.1|FK954740
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
EST: CGCTCGGCGGCCTGGCCGCTGCGACGGANCCGGAGCTGGACCAGTTCATG GAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
genomic: CGCTCGGCGGCCTGGCCGCTGCGACGGAGCCGGAGCTGGACCAGTTCATGgtgaggcatc ... tatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCG
attattagtcgttttcagctcgggctcggatttaatttgcgtgtatatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGAAGGGTGGAGTCGCAGCTGAACT
atttaat putative branch site (score: 4)
atttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcatctttaggtttatttcacgcgcgcgcagcgcaccattattagtcgttttcagctcgggctcggatttaatttgcgtgtatatatggtagGAGGCGTACCACGAGATGCTGGTGAAGTTCAGGGAGGAGCTGACGAGGCCGCTGCAGGAGGCGATGGAGTTCATGCGAAGGGTGGAGTCGCAGCTGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA