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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagatatgcttctgttttaacaccagaattttgtgttatgtcataatattagttccatgtgtgtacagacatattttaatgtttattgaatgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGT

Basic information

species Zea mays
transcript GRMZM2G017086_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 3'ss of exon 1
gagatatgcttctgttttaacaccagaattttgtgttatgtcataatattagttccatgtgtg--tacagacatattttaatgtttattgaatgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGT
   || || | |  |  | | | |||  || |||||| | || | |   |   | | |       | |  ||     ||  || || | ||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||| |||||||| ||  |||| || ||||| ||| | ||||| || ||||||||
-gtatttgttccactagtcaaagcagt-ttatgtgttgtttcttcacccttccttcgtactcaatttcttaccatgattgctgcttttggaatgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAGCCAGCCGCCTGTTGTCTTTAAGACCCAGCTATACACTCTGACTGGTGT

upper sequence: GRMZM2G017086_T05 (Zea mays), 3'ss of exon 1
lower sequence: AT3G21280.1 (Arabidopsis thaliana), 3'ss of exon 1
gagatatgcttctgttttaacaccagaattttgtgttatgtcataatattagttcca-tgtgtgtacagacatattttaa--tgtttattgaatgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGT
  | | | ||| | || | | |   |  ||   || ||||   || ||| || |  | || |  |       | || | |  ||| | ||   | || | |||| |||||||| ||||| ||| || | |||    | || |||||||| ||||||||||||||  ||||||||||| ||||||||||     | | ||| ||
--ggtgt-cttatattctgaaatatgtcttacttgatatgatttattatgagcttgaatgggaatgtgacattgttctgaattgtgtttttgtttatgtacagTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGAGAGTATCGAGATTGATACTAGCCAGCCTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211522096|gb|FL426854.1|FL426854
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211512097|gb|FL429023.1|FL429023
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211493528|gb|FL393023.1|FL393023
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTW
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211043164|gb|FL426037.1|FL426037
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACC-NNGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211020022|gb|FL404266.1|FL404266
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211140278|gb|FL369584.1|FL369584
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211542655|gb|FL412583.1|FL412583
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCG-NGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211144966|gb|FL424885.1|FL424885
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|78121540|gb|DV539924.1|DV539924
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211168209|gb|FL421347.1|FL421347
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211449542|gb|FL376102.1|FL376102
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211504148|gb|FL387155.1|FL387155
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCKTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211408393|gb|FL407128.1|FL407128
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211066798|gb|FL430461.1|FL430461
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211133807|gb|FL389465.1|FL389465
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211513751|gb|FL391725.1|FL391725
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211321831|gb|FL416221.1|FL416221
EST:     AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211059996|gb|FL387688.1|FL387688
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211455945|gb|FL376150.1|FL376150
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211099805|gb|FL386855.1|FL386855
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211008625|gb|FL395313.1|FL395313
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211106564|gb|FL394472.1|FL394472
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211037648|gb|FL421296.1|FL421296
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211219147|gb|FL370888.1|FL370888
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211141642|gb|FL394943.1|FL394943
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211085323|gb|FL409653.1|FL409653
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211254374|gb|FL402662.1|FL402662
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|74240015|gb|DT647929.1|DT647929
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211431557|gb|FL401073.1|FL401073
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211141962|gb|FL418179.1|FL418179
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211536230|gb|FL396283.1|FL396283
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211527639|gb|FL412989.1|FL412989
EST:     AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211335073|gb|FL428116.1|FL428116
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|31998167|gb|CD661962.1|CD661962
EST:     AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: AACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211459123|gb|FL410721.1|FL410721
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211379399|gb|FL389227.1|FL389227
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTTCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211076695|gb|FL396856.1|FL396856
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGYCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211036892|gb|FL381576.1|FL381576
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211121494|gb|FL373631.1|FL373631
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|50332356|gb|CO527482.1|CO527482
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
EST: gi|211521051|gb|FL387963.1|FL387963
EST:     CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCG                         TAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA
genomic: CAAGTAAACCCCGTTTCCACAACGTCACCGCACCGCCGTCATGCCGACCGgtgagctcct ... tgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattagttccatgtgtgtacagacatattttaatgtttattgaatgatttccagTAAGCGTGAAATGGCAGAAGGAGCTCTTTCCAGGCATAGAGATTGACACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGT
                            ttttaat  putative branch site (score: 3)
                                                tttcc  putative PPT
                       acatattttaatgttt  TA-rich tract