Sequence
atgc intronic sequence ATGC exonic sequencegtatgctaccatcgctcgctccgttgttccggatttcgcttgcttatctggcggcttcgccggtgctgacgtattatttggtttggtggtttgcgcagATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGGTGAGTCTGCTCGACCTCCTCGGGGCCGCCGACAGTCACTTTGCTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G016817_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g34640.1 (Oryza sativa), 3'ss of exon 1
gtatgctaccatcgctcgctccgttgttccggatttcgcttgcttatctggcggcttcgccggtgctgacgtattatttggtttggtggtttgcgcagATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGGTGAGTCTGCTCGACCTCCTCGGGGCCGCCGACAGTCACTTTGCTAG-------------
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-------gtaatctctccccccgcccctctccctcccgcttcctta-ctgttagcttc--cggatttgcgctgttcggtctctccctgatgt-cgctgacgtgcctcgttgctgcccggcttggggct--ggtgtgt-tgttttctttttgtgtgtagATGTGGAGAAGTTCTACCAGCTCTGCGACCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211445818|gb|FL055675.1|FL055675EST: CCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACG ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG
genomic: CCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGgtatgctacc ... gtttgcgcagATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatctggcggcttcgccggtgctgacgtattatttggtttggtggtttgcgcagATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGGTGAGTCTGCTCGACCTCCTCGGGGCCGCCGACAGTCACTTTGCTAG
tgctgac putative branch site (score: 2)
tattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgctaccatcgctcgctccgttgttccggatttcgcttgcttatctggcggcttcgccggtgctgacgtattatttggtttggtggtttgcgcagATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGGTGAGTCTGCTCGACCTCCTCGGGGCCGCCGACAGTCACTTTGCTAG
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